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Issues list

Clean up output in the galaxy component
#1 opened Dec 30, 2014 by lee212 updated Dec 30, 2014
current version is dependent to silo?
#4 opened Jan 13, 2015 by lee212 updated Jan 13, 2015
Mismatch results between hmmsearch v.3 and hmmsearch v.2
#5 opened Jan 14, 2015 by lee212 updated Jan 14, 2015
several issues running mgescan.py
#6 opened Jan 28, 2015 by lee212 updated Jan 28, 2015
speed up is possible in several places?
#7 opened Jan 28, 2015 by lee212 updated Jan 28, 2015
MGEScan's bug? zombie process found.
#8 opened Jan 28, 2015 by lee212 updated Jan 28, 2015
Test 1: Running the program (nosetest program?)
#9 opened Jan 29, 2015 by lee212 updated Jan 29, 2015
Comparison Speed of running MGEScan v1 and v2
#10 opened Jan 29, 2015 by lee212 updated Jan 29, 2015
database is n/a in galaxy? e.g. d. pulex is not found.
#11 opened Jan 30, 2015 by lee212 updated Jan 30, 2015
forward, backward strand in run_MGEScan.pl
#12 opened Feb 3, 2015 by lee212 updated Feb 3, 2015
Profiling perl DProf
#13 opened Feb 3, 2015 by lee212 updated Feb 3, 2015
hmmsearch2 stat
#14 opened Feb 4, 2015 by lee212 updated Feb 4, 2015
estimate for calculation time?
#15 opened Feb 9, 2015 by lee212 updated Feb 9, 2015
LTR: Missing ltr binary
#16 opened Feb 10, 2015 by lee212 updated Feb 10, 2015
divided_genome needs to be deleted
#17 opened Feb 10, 2015 by lee212 updated Feb 10, 2015
tool output messages are somewhat irrelevant
#18 opened May 17, 2015 by lee212 updated May 17, 2015
accuracy test
#19 opened Feb 12, 2016 by lee212 updated Feb 12, 2016
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