creating-conda-env

conda create -n ShinyOMIM
conda activate ShinyOMIM
conda install -c conda-forge autopep8
conda install -c conda-forge cffi
conda install -c conda-forge constantly
conda install -c conda-forge cryptography
conda install -y -c conda-forge cssselect
conda install -y -c conda-forge dateparser
conda install -y -c conda-forge mongoengine
conda install -y -c conda-forge numpy
conda install -y -c conda-forge pandas
conda install -y -c conda-forge python-dotenv
conda install -y -c conda-forge requests
conda install -y -c conda-forge spacy
python -m spacy download en_core_web_sm

## install mongodb on Ubuntu 20.04
### https://www.digitalocean.com/community/tutorials/how-to-install-mongodb-on-ubuntu-20-04
curl -fsSL https://www.mongodb.org/static/pgp/server-4.4.asc | sudo apt-key add -
echo "deb [ arch=amd64,arm64 ] https://repo.mongodb.org/apt/ubuntu focal/mongodb-org/4.4 multiverse" | sudo tee /etc/apt/sources.list.d/mongodb-org-4.4.list
sudo apt update
sudo apt install mongodb-org
sudo systemctl start mongod.service
sudo systemctl status mongod
sudo systemctl enable mongod


# In R
> reticulate::conda_list()
             name                                               python
1            DPED            /home/mtg/miniconda3/envs/DPED/bin/python
2       ShinyOMIM       /home/mtg/miniconda3/envs/ShinyOMIM/bin/python
3          filteR          /home/mtg/miniconda3/envs/filteR/bin/python
4            mity            /home/mtg/miniconda3/envs/mity/bin/python
5         python2         /home/mtg/miniconda3/envs/python2/bin/python
6    r-reticulate    /home/mtg/miniconda3/envs/r-reticulate/bin/python
7 racingBarCharts /home/mtg/miniconda3/envs/racingBarCharts/bin/python
8         ranikay         /home/mtg/miniconda3/envs/ranikay/bin/python
9            umap            /home/mtg/miniconda3/envs/umap/bin/python
> reticulate::use_condaenv("ShinyOMIM")