-
Notifications
You must be signed in to change notification settings - Fork 3
/
Copy pathmodel_parameters.txt
53 lines (53 loc) · 2.27 KB
/
model_parameters.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
N_part 1000 Number_of_participants
EIR_equil 0.05 equilibrium_EIR
Prop_far 0.0 Proportion_farauti
Prop_pun 0.0 Proportion_punctulatus
Prop_kol 1 Proportion_koliensis
start_time 2000 Start_time_in_years
end_time 2030 End_time_in_years
burnin_time 10 Burn_in_time_in_years
age_mean 8212.5 mean_population_age
age_max 29200 maximum_population_age
age_0 2920 age-dependent_biting_parameter
rho_age 0.85 age-dependent_biting_parameter
sig_het 1.292285 heterogeneity_exposure
bb 0.5 human_to_mosquito_transmission
c_PCR 0.035 mosquito_to_human_transmission_PCR_detectable
c_LM 0.1 mosquito_to_huma_transmission_LM_detectable
c_D 0.80 mosquito_to_human_transmission_clinical_disease
c_T 0.40 mosquito_to_human_transmission_treatment
d_latent 10 latent_duration_in_liver
r_LM 0.1 LM_recovery_rate
r_D 0.2 clinical_disease_recovery
r_T 1.0 treatment_clearance_rate
d_PCR_min 10 duration_of_PCR_infection_full_immunity
d_PCR_max 70 duration_of_PCR_infection_no_immunity
BS_treat_cov_base 0.333 treatment_coverage
BS_treat_eff_base 1.0 treatment_efficacy
BS_treat_proph_base 28.0 treatment_prophylaxis
A_PCR_50pc 9.9 anti_parasite_immunity_scale_parameter
K_PCR 4.602 anti_parasite_immunity_shape_parameter
u_par 19.77 anti_parasite_immunity_scale_paramter
r_par 0.0002739726 anti_parasite_immunity_decay
phi_LM_max 0.8918 prob_BS_infection_no_immunity
phi_LM_min 0.0043 prob_BS_infection_full_immunity
A_LM_50pc 27.52 BS_immunity_scale_parameter
K_LM 2.403 BS_immunity_shape_parameter
u_clin 7.85 clinical_immunity_scale_paramter
r_clin 0.0000913242 clinical_immunity_decay
phi_D_max 0.8605 prob_clinical_episode_no_immunity
phi_D_min 0.018 prob_clinical_episode_max_immunity
A_D_50pc 11.538 clinical_immunity_scale_parameter
K_D 2.250 clinical_immunity_shape_parameter
P_mat 0.421 proportion_maternal_immunity
d_mat 35.148 maternal_immunity_decay
ff 0.02439024 relapse_rate
gamma_L 0.002610966 liver_clearance_rate
G6PD_prev 0.0742 G6PD_deficiency_prevalence
CYP2D6_prev 0.05 CYP2D6_prevalence
rho_round_LLIN 0.5 correlation_between_LLIN_rounds
rho_round_IRS 0.8 correlation_between_IRS_rounds
rho_round_MDA 0.5 correlation_between_MDA_rounds
rho_LLIN_IRS 0.6 correlation_between_IRS_LLINS
rho_MDA_IRS 0.2 correlation_between_IRS_MDA
rho_MDA_LLIN 0.2 correlation_between_MDA_LLIN