docker-compose.test.yml

version: "3"
services:

  # Container used for starting a container to run training for original OpenPredict drug-disease model
  train:
    build:
      context: .
      dockerfile: src/openpredict_model/Dockerfile
    ports:
      - 8808:8808
    volumes:
      - ./:/app
    environment:
      # Show print() in logs:
      PYTHONUNBUFFERED: '1'
      LOG_LEVEL: 'INFO'
      NO_JAEGER: "true"
    entrypoint: sleep infinity


  # Container used for testing and running scripts
  tests:
    build: .
    volumes:
      - ./:/app
      - ~/.nanopub-docker:/root/.nanopub
    environment:
      PYTHONUNBUFFERED: '1'
      LOG_LEVEL: 'INFO'
      NO_JAEGER: "true"
    entrypoint: pytest --cov=src tests/integration
    # entrypoint:  pytest tests/integration/test_train_model.py -s
    # entrypoint:  pytest tests/integration/test_openpredict_api.py::test_post_trapi -s
    # entrypoint:  pytest tests/package/test_decorator.py -s


  # Container to deploy a JupyterLab/VSCode workspace for development
  # workspace:
  #   image: ghcr.io/maastrichtu-ids/jupyterlab
  #   ports:
  #     - 8888:8888
  #   volumes:
  #     - ./:/home/jovyan/work
  #   user: root
  #   environment:
  #     - GRANT_SUDO=yes
  #     - LOG_LEVEL=INFO
  #     ## With password:
  #     # - JUPYTER_TOKEN=password