cb_model.xml

<tool id="cb_model" name="Modelisation" version="0.0.0" profile = "20.01">
    <description>things</description>
    <requirements>
        <requirement type="package" version="1.0.6">r-rlang</requirement>
        <requirement type="package" version="1.0.10">r-dplyr</requirement>
        <requirement type="package" version="1.2.1">r-tidyr</requirement>
        <requirement type="package" version="1.14.2">r-data.table</requirement>
        <requirement type="package" version="1.4.1">r-stringr</requirement>
        <requirement type="package" version="1.5_1">r-matrix</requirement>
        <requirement type="package" version="7.3_58.1">r-mass</requirement>
        <requirement type="package" version="1.1.4">r-glmmtmb</requirement>
        <requirement type="package" version="3.1_1">r-car</requirement>
        <requirement type="package" version="0.10.0">r-performance</requirement>
        <requirement type="package" version="0.4.6">r-dharma</requirement>
        <requirement type="package" version="1.8.3">r-bestnormalize</requirement>
        <requirement type="package" version="2.12.0">r-r.utils</requirement>
        <requirement type="package" version="1.2_7">r-spdep</requirement>
        <requirement type="package" version="0.0_8">r-combinat</requirement>
        <requirement type="package" version="1.46.0">r-mumin</requirement>
        <requirement type="package" version="1.7.3">r-mgsub</requirement>
        <requirement type="package" version="4.7_1">r-hmisc</requirement>
        <requirement type="package" version="2.0.4">r-performanceanalytics</requirement>
    </requirements>
    <required_files>
        <include type="literal" path="cb_model.r"/>
    </required_files>
    <command detect_errors="exit_code"><![CDATA[
        Rscript
            '$__tool_directory__/cb_model.r'
            '$input_qecbnato0'
            '$output_model_rdata'
            '$output_tbl'
        ]]>
    </command>
    <inputs>
        <param name="input_qecbnato0" type="data" format="data" label="Input qecbnato0"/>
    </inputs>
    <outputs>
        <data name="output_model_rdata" from_work_dir="tbl.models.RDS" format="Rdata" label="Models table Rdata"/>
        <!--<data name="output_tbl" from_work_dir="Models.tabular" format="tabular" label="Models table"/>-->
        <collection type="list" name="output_tbl" label="Resample tabular">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.tabular" visible="false" format="tabular"/>
        </collection>
    </outputs>
    <tests>
        <test expect_num_outputs="3">
            <param name="input_data" value=""/>
            <output name="output_model">
                <assert_contents>
                    <has_n_columns n="3"/>
                </assert_contents>
            </output>
            <output_collection name="plots" type="list" count="3"/>
        </test>
    </tests>
    <help><![CDATA[
========================
GLMM
========================


**What it does**

Calculates GLMM step by step and dredge

**Input description**

TWO input files in csv format.

+---------------+------------------+
|      CSV      |        CSV       |
+===============+==================+
| champbloc.csv | ficheterrain.csv |
+---------------+------------------+
|      ...      |        ...       |
+---------------+------------------+


**Output**

- .RDS file 1 of them for the ivr
- Multiple png plots one for each of the locations



    ]]>    </help>

</tool>