Makefile_REPORT

# ----------------------------------------------- #
# Arch no.1: Unidirect LSTM Models Section (DNA)  #
# ----------------------------------------------- #

arch_1_onehot_conv_lstm_holdout:
	python3 main.py \
	--validation \
	--sequence_type dna \
    --path_source_data ./data/bins_translated \
    --load_network ModelConvUnidirect \
    --network_parameters models/ModelConvUnidirect.json \
    --num_epochs 100 \
    --batch_size 16 \
    --lr 1e-4 \
    --onehot_flag

arch_1_emb_conv_lstm_holdout:
	python3 main.py \
	--validation \
	--sequence_type dna \
	--path_source_data ./data/bins_translated \
	--load_network ModelConvUnidirect \
	--network_parameters models/ModelConvUnidirect.json \
	--num_epochs 100 \
	--batch_size 16 \
	--lr 1e-4

arch_1_onehot_lstm_holdout:
	python3 main.py \
	--validation \
	--sequence_type dna \
	--path_source_data ./data/bins_translated \
	--load_network ModelUnidirect \
	--network_parameters models/ModelUnidirect.json \
	--num_epochs 100 \
	--batch_size 16 \
	--lr 1e-4 \
	--onehot_flag

arch_1_emb_lstm_holdout:
	python3 main.py \
	--validation \
	--sequence_type dna \
	--path_source_data ./data/bins_translated \
	--load_network ModelUnidirect \
	--network_parameters models/ModelUnidirect.json \
	--num_epochs 100 \
	--batch_size 16 \
	--lr 1e-4

# ----------------------------------------------- #
# Arch no.2: Bidirect LSTM Models Section (DNA)   #
# ----------------------------------------------- #

arch_2_onehot_bidirect_lstm_holdout:
	python3 main.py \
	--validation \
	--path_source_data ./data/bins_translated \
	--load_network ModelBidirectDNA \
	--sequence_type dna \
	--onehot_flag \
	--num_epochs 100 \
	--batch_size 20 \
	--lr 5e-4 \
	--network_parameters models/ModelBidirectDNA.json

# ------------------------------------------------- #
# Arch no.3: Bidirect LSTM Models Section (PROTEIN) #
# ------------------------------------------------- #

arch_3_onehot_lstm_protein_holdout:
	python3 main.py \
	--validation \
	--network_parameters models/ModelOneHotProtein.json \
	--path_source_data ./data/bins_translated \
	--batch_size 32 \
	--num_epochs 100 \
	--lr 5e-4 \
	--load_network ModelOneHotProtein \
	--sequence_type protein \
	--onehot_flag

# -------------------------------------------------- #
# Arch no.4: Attention+LSTM Models Section (PROTEIN) #
# -------------------------------------------------- #

arch_4_attention_lstm_holdout:
	python3 main.py \
	--validation \
	--sequence_type protein \
	--batch_size 32 \
	--num_epochs 100 \
	--lr 5e-4 \
	--network_parameters ./models/ModelEmbeddingBidirect.json \
	--load_network ModelEmbeddingBidirect \
	--path_source_data ./data/bins_translated

arch_4_attention_conv_lstm_holdout:
	python3 main.py \
	--validation \
	--sequence_type protein \
	--batch_size 20 \
	--num_epochs 100 \
	--lr 5e-4 \
	--onehot_flag \
	--network_parameters ./models/ModelConvBidirect.json \
	--load_network ModelConvBidirect \
	--path_source_data ./data/bins_translated