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proc.3dd.ppi.post.full
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#!/bin/tcsh
set subj = $1
set seed = $2
set prefix_3dd = PPI.$seed.
# ------------------------------
# run the regression analysis
3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD \
-censor motion_${subj}_censor.1D \
-ortvec motion_demean.1D mot_demean \
-polort 3 \
-num_stimts 11 \
-stim_times 1 stimuli/AFNI_timing.times.1.txt 'BLOCK(3,1)' \
-stim_label 1 VpAp \
-stim_times 2 stimuli/AFNI_timing.times.2.txt 'BLOCK(3,1)' \
-stim_label 2 VpAn \
-stim_times 3 stimuli/AFNI_timing.times.3.txt 'BLOCK(3,1)' \
-stim_label 3 VnAp \
-stim_times 4 stimuli/AFNI_timing.times.4.txt 'BLOCK(3,1)' \
-stim_label 4 VnAn \
-stim_times 5 stimuli/AFNI_timing.times.5.txt 'BLOCK(3,1)' \
-stim_label 5 catch \
-stim_file 6 stimuli/p6.$seed.01.VpAp.rall.PPI.1D \
-stim_label 6 PPI.VpAp \
-stim_file 7 stimuli/p6.$seed.02.VpAn.rall.PPI.1D \
-stim_label 7 PPI.VpAn \
-stim_file 8 stimuli/p6.$seed.03.VnAp.rall.PPI.1D \
-stim_label 8 PPI.VnAp \
-stim_file 9 stimuli/p6.$seed.04.VnAn.rall.PPI.1D \
-stim_label 9 PPI.VnAn \
-stim_file 10 stimuli/p6.$seed.05.catch.rall.PPI.1D \
-stim_label 10 PPI.PW \
-stim_file 11 stimuli/ppi.seed.$seed.1D \
-stim_label 11 PPI.seed \
-jobs 8 \
-gltsym 'SYM: VpAp -VnAn' \
-glt_label 1 P-N \
-gltsym 'SYM: PPI.VpAp -PPI.VnAn' \
-glt_label 2 PPI:P-N \
-fout -tout -x1D ${prefix_3dd}X.xmat.1D -xjpeg ${prefix_3dd}X.jpg \
-x1D_uncensored ${prefix_3dd}X.nocensor.xmat.1D \
-errts ${prefix_3dd}errts.${subj} \
-bucket ${prefix_3dd}stats.$subj