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MischaLundberg / GRIPper Public

forked from adamewing/GRIPper

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GRIPper

/

human_sample.cfg

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15 lines (15 loc) · 323 Bytes

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GRIPper

/

human_sample.cfg

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15 lines (15 loc) · 323 Bytes

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[discord]

tabixDir=data/tabix

readLength=100

insertSize=300

minMapQ=20

configFileName=config.txt

minPeakSize=8

maxReadLen=120

zeroChar=#

minClipQual=15

hg19=/path/to/bwa/indexed/hg19.fa

annotDir=data/annotation

mrnaFastaFile=data/hg19_knownGene_transcripts.fa.gz

pgTabixFile=data/tabix/encodePseudo.hg19.txt.gz

usechr=True

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