diff --git a/src/MainStudy/pass1b06AssayTissueTreeData.js b/src/MainStudy/pass1b06AssayTissueTreeData.js index 4b03f424..438496cf 100644 --- a/src/MainStudy/pass1b06AssayTissueTreeData.js +++ b/src/MainStudy/pass1b06AssayTissueTreeData.js @@ -49,6 +49,7 @@ const pass1b06AssayTissueTreeData = [ ['Targeted Tricarboxylic Acid Cycle', 'Heart'], ['Targeted Tricarboxylic Acid Cycle', 'Gastrocnemius'], ['Targeted Tricarboxylic Acid Cycle', 'Hippocampus'], + ['Targeted Tricarboxylic Acid Cycle', 'Plasma'], ['Targeted Oxylipins', 'White Adipose'], ['Targeted Oxylipins', 'Brown Adipose'], ['Targeted Oxylipins', 'Liver'], @@ -57,6 +58,7 @@ const pass1b06AssayTissueTreeData = [ ['Targeted Oxylipins', 'Heart'], ['Targeted Oxylipins', 'Gastrocnemius'], ['Targeted Oxylipins', 'Hippocampus'], + ['Targeted Oxylipins', 'Plasma'], ['Targeted Nucleotides', 'White Adipose'], ['Targeted Nucleotides', 'Liver'], ['Targeted Nucleotides', 'Heart'], @@ -65,6 +67,7 @@ const pass1b06AssayTissueTreeData = [ ['Targeted Keto Acids', 'Liver'], ['Targeted Keto Acids', 'Heart'], ['Targeted Keto Acids', 'Gastrocnemius'], + ['Targeted Keto Acids', 'Plasma'], ['Targeted Ethanolamides', 'White Adipose'], ['Targeted Ethanolamides', 'Brown Adipose'], ['Targeted Ethanolamides', 'Liver'], @@ -73,6 +76,7 @@ const pass1b06AssayTissueTreeData = [ ['Targeted Ethanolamides', 'Heart'], ['Targeted Ethanolamides', 'Gastrocnemius'], ['Targeted Ethanolamides', 'Hippocampus'], + ['Targeted Ethanolamides', 'Plasma'], ['Targeted Amines', 'White Adipose'], ['Targeted Amines', 'Brown Adipose'], ['Targeted Amines', 'Liver'], @@ -81,6 +85,7 @@ const pass1b06AssayTissueTreeData = [ ['Targeted Amines', 'Heart'], ['Targeted Amines', 'Gastrocnemius'], ['Targeted Amines', 'Hippocampus'], + ['Targeted Amines', 'Plasma'], ['Targeted Acyl-CoA', 'White Adipose'], ['Targeted Acyl-CoA', 'Liver'], ['Targeted Acyl-CoA', 'Heart'], @@ -93,6 +98,7 @@ const pass1b06AssayTissueTreeData = [ ['Untargeted Reversed-Phase Positive', 'Heart'], ['Untargeted Reversed-Phase Positive', 'Gastrocnemius'], ['Untargeted Reversed-Phase Positive', 'Hippocampus'], + ['Untargeted Reversed-Phase Positive', 'Plasma'], ['Untargeted Reversed-Phase Negative', 'White Adipose'], ['Untargeted Reversed-Phase Negative', 'Brown Adipose'], ['Untargeted Reversed-Phase Negative', 'Liver'], @@ -101,6 +107,7 @@ const pass1b06AssayTissueTreeData = [ ['Untargeted Reversed-Phase Negative', 'Heart'], ['Untargeted Reversed-Phase Negative', 'Gastrocnemius'], ['Untargeted Reversed-Phase Negative', 'Hippocampus'], + ['Untargeted Reversed-Phase Negative', 'Plasma'], ['Untargeted Lipidomics Reversed-Phase Positive', 'White Adipose'], ['Untargeted Lipidomics Reversed-Phase Positive', 'Brown Adipose'], ['Untargeted Lipidomics Reversed-Phase Positive', 'Liver'], @@ -109,6 +116,7 @@ const pass1b06AssayTissueTreeData = [ ['Untargeted Lipidomics Reversed-Phase Positive', 'Heart'], ['Untargeted Lipidomics Reversed-Phase Positive', 'Gastrocnemius'], ['Untargeted Lipidomics Reversed-Phase Positive', 'Hippocampus'], + ['Untargeted Lipidomics Reversed-Phase Positive', 'Plasma'], ['Untargeted Lipidomics Reversed-Phase Negative', 'White Adipose'], ['Untargeted Lipidomics Reversed-Phase Negative', 'Brown Adipose'], ['Untargeted Lipidomics Reversed-Phase Negative', 'Liver'], @@ -117,6 +125,7 @@ const pass1b06AssayTissueTreeData = [ ['Untargeted Lipidomics Reversed-Phase Negative', 'Heart'], ['Untargeted Lipidomics Reversed-Phase Negative', 'Gastrocnemius'], ['Untargeted Lipidomics Reversed-Phase Negative', 'Hippocampus'], + ['Untargeted Lipidomics Reversed-Phase Negative', 'Plasma'], ['Untargeted Ion-Pair Negative', 'White Adipose'], ['Untargeted Ion-Pair Negative', 'Brown Adipose'], ['Untargeted Ion-Pair Negative', 'Liver'], @@ -125,14 +134,26 @@ const pass1b06AssayTissueTreeData = [ ['Untargeted Ion-Pair Negative', 'Heart'], ['Untargeted Ion-Pair Negative', 'Gastrocnemius'], ['Untargeted Ion-Pair Negative', 'Hippocampus'], + ['Untargeted Ion-Pair Negative', 'Plasma'], + ['Untargeted HILIC-Positive', 'Vena Cava'], ['Untargeted HILIC-Positive', 'White Adipose'], ['Untargeted HILIC-Positive', 'Brown Adipose'], ['Untargeted HILIC-Positive', 'Liver'], + ['Untargeted HILIC-Positive', 'Small Intestine'], ['Untargeted HILIC-Positive', 'Lung'], + ['Untargeted HILIC-Positive', 'Ovaries'], + ['Untargeted HILIC-Positive', 'Testes'], + ['Untargeted HILIC-Positive', 'Spleen'], + ['Untargeted HILIC-Positive', 'Colon'], + ['Untargeted HILIC-Positive', 'Adrenal'], ['Untargeted HILIC-Positive', 'Kidney'], ['Untargeted HILIC-Positive', 'Heart'], + ['Untargeted HILIC-Positive', 'Vastus Lateralis'], ['Untargeted HILIC-Positive', 'Gastrocnemius'], + ['Untargeted HILIC-Positive', 'Hypothalamus'], + ['Untargeted HILIC-Positive', 'Cortex'], ['Untargeted HILIC-Positive', 'Hippocampus'], + ['Untargeted HILIC-Positive', 'Plasma'], ['Protein Ubiquitination', 'Liver'], ['Protein Ubiquitination', 'Heart'], ['Global Proteomics', 'White Adipose'], @@ -141,22 +162,35 @@ const pass1b06AssayTissueTreeData = [ ['Global Proteomics', 'Kidney'], ['Global Proteomics', 'Heart'], ['Global Proteomics', 'Gastrocnemius'], + ['Global Proteomics', 'Cortex'], ['Phosphoproteomics', 'White Adipose'], ['Phosphoproteomics', 'Liver'], ['Phosphoproteomics', 'Lung'], ['Phosphoproteomics', 'Kidney'], ['Phosphoproteomics', 'Heart'], ['Phosphoproteomics', 'Gastrocnemius'], + ['Phosphoproteomics', 'Cortex'], ['Acetyl Proteomics', 'Liver'], ['Acetyl Proteomics', 'Heart'], + ['RNA-seq', 'Vena Cava'], ['RNA-seq', 'White Adipose'], ['RNA-seq', 'Brown Adipose'], ['RNA-seq', 'Liver'], + ['RNA-seq', 'Small Intestine'], ['RNA-seq', 'Lung'], + ['RNA-seq', 'Ovaries'], + ['RNA-seq', 'Testes'], + ['RNA-seq', 'Spleen'], + ['RNA-seq', 'Colon'], + ['RNA-seq', 'Adrenal'], ['RNA-seq', 'Kidney'], ['RNA-seq', 'Heart'], + ['RNA-seq', 'Vastus Lateralis'], ['RNA-seq', 'Gastrocnemius'], + ['RNA-seq', 'Hypothalamus'], + ['RNA-seq', 'Cortex'], ['RNA-seq', 'Hippocampus'], + ['RNA-seq', 'Blood Rna'], ]; export default pass1b06AssayTissueTreeData; diff --git a/src/MainStudy/pass1b_06_assay_tissue.json b/src/MainStudy/pass1b_06_assay_tissue.json index eb8804c9..1bde6e57 100644 --- a/src/MainStudy/pass1b_06_assay_tissue.json +++ b/src/MainStudy/pass1b_06_assay_tissue.json @@ -29,6 +29,7 @@ "t70-white-adipose" ], "metab-t-amines": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -39,6 +40,7 @@ "t70-white-adipose" ], "metab-t-etamidpos": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -49,6 +51,7 @@ "t70-white-adipose" ], "metab-t-ka": [ + "t31-plasma", "t55-gastrocnemius", "t58-heart", "t68-liver", @@ -61,6 +64,7 @@ "t70-white-adipose" ], "metab-t-oxylipneg": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -71,6 +75,7 @@ "t70-white-adipose" ], "metab-t-tca": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -83,16 +88,28 @@ }, "metabolomics-untargeted": { "metab-u-hilicpos": [ + "t31-plasma", "t52-hippocampus", + "t53-cortex", + "t54-hypothalamus", "t55-gastrocnemius", + "t56-vastus-lateralis", "t58-heart", "t59-kidney", + "t60-adrenal", + "t61-colon", + "t62-spleen", + "t63-testes", + "t64-ovaries", "t66-lung", + "t67-small-intestine", "t68-liver", "t69-brown-adipose", - "t70-white-adipose" + "t70-white-adipose", + "t99-vena-cava" ], "metab-u-ionpneg": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -103,6 +120,7 @@ "t70-white-adipose" ], "metab-u-lrpneg": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -113,6 +131,7 @@ "t70-white-adipose" ], "metab-u-lrppos": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -123,6 +142,7 @@ "t70-white-adipose" ], "metab-u-rpneg": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -133,6 +153,7 @@ "t70-white-adipose" ], "metab-u-rppos": [ + "t31-plasma", "t52-hippocampus", "t55-gastrocnemius", "t58-heart", @@ -149,6 +170,7 @@ "t68-liver" ], "prot-ph": [ + "t53-cortex", "t55-gastrocnemius", "t58-heart", "t59-kidney", @@ -157,6 +179,7 @@ "t70-white-adipose" ], "prot-pr": [ + "t53-cortex", "t55-gastrocnemius", "t58-heart", "t59-kidney", @@ -171,14 +194,25 @@ }, "transcriptomics": { "transcript-rna-seq": [ + "t30-blood-rna", "t52-hippocampus", + "t53-cortex", + "t54-hypothalamus", "t55-gastrocnemius", + "t56-vastus-lateralis", "t58-heart", "t59-kidney", + "t60-adrenal", + "t61-colon", + "t62-spleen", + "t63-testes", + "t64-ovaries", "t66-lung", + "t67-small-intestine", "t68-liver", "t69-brown-adipose", - "t70-white-adipose" + "t70-white-adipose", + "t99-vena-cava" ] } } diff --git a/src/MainStudy/studyAssays.jsx b/src/MainStudy/studyAssays.jsx index 78075ff8..9c738539 100644 --- a/src/MainStudy/studyAssays.jsx +++ b/src/MainStudy/studyAssays.jsx @@ -22,7 +22,7 @@ function StudyAssays() { chart: { spacingBottom: 30, marginRight: 120, - height: 2000, + height: 2600, }, title: { align: 'center',