pydpiper 2.0.10 provides inappropriate memory specification to qbatch for SGE

[gdevenyi]

Users of qbatch are required to format their memory specification according to how the queuing system accepts it, qbatch does no testing.

"GB" is not an accepted input format for SGE.

[bcdarwin]

Interesting ... that means qbatch actually isn't an abstraction over the queueing system. I guess I'll add some way to format memory specs to Pydpiper, then.

Sorry for the inconvenience ... the whole reason for the qbatch switch was that we moved from SGE to slurm (so don't have an SGE system for testing anymore).

[gdevenyi]

I can add it I guess. Pypy needs a new release anyways

[gdevenyi]

Time for Travis testing?

[gdevenyi]

Fun fact: PBS documentation doesn't mention capitalized memory submission options as being valid :)

[gdevenyi]

Helping someone get pydpiper working on their cluster and bitten by this again.

I have the interface idea listed at CoBrALab/qbatch#145, contributions are welcome :)