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Implement copy number variation (CNV) analysis #7

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nictru opened this issue Sep 15, 2023 · 1 comment
Open
3 tasks

Implement copy number variation (CNV) analysis #7

nictru opened this issue Sep 15, 2023 · 1 comment
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backlog Should be kept in mind for later enhancement New feature or request

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@nictru
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nictru commented Sep 15, 2023

Roadmap:

  • Find a fitting tool
  • Write an example script
  • Integrate the script to the pipeline
@FPetitprez
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This is probably for later, since methods require a normal / tumour reference. This means we cannot use that to infer which cells are cancer cells.
Methods that have been considered so far: inferCNV, CopyKAT

@FPetitprez FPetitprez added the enhancement New feature or request label Sep 15, 2023
@nictru nictru added the backlog Should be kept in mind for later label Sep 16, 2023
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@FPetitprez @nictru