diff --git a/topics/vc/lab_vc.qmd b/topics/vc/lab_vc.qmd index e2109466d..26c5608ab 100644 --- a/topics/vc/lab_vc.qmd +++ b/topics/vc/lab_vc.qmd @@ -901,7 +901,7 @@ do echo "Now analyzing: ${sample}" # map the reads bwa mem \\ - -R "@RG\tID:${sample}\tPU:flowcellx_lanex\tSM:${sample}\tLB:libraryx\tPL:illumina" \\ + -R "@RG\\tID:${sample}\\tPU:flowcellx_lanex\\tSM:${sample}\\tLB:libraryx\\tPL:illumina" \\ -t 1 human_g1k_v37_chr2.fasta \\ "${sample}_1.fq" "${sample}_2.fq" | samtools sort > "${sample}.bam"