From dd862165e01879e55f08bfd086b025dd3eb7754f Mon Sep 17 00:00:00 2001
From: David John Gagne <davidjohngagne@gmail.com>
Date: Tue, 13 Sep 2022 10:30:45 -0600
Subject: [PATCH 1/3] Added requirements.txt

---
 requirements.txt | 5 +++++
 1 file changed, 5 insertions(+)
 create mode 100644 requirements.txt

diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..196aec4
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,5 @@
+numpy
+scipy
+matplotlib
+optuna
+setuptools

From 0da095ea4aa8454ba8a3b8e88b5edb9515a6f07a Mon Sep 17 00:00:00 2001
From: David John Gagne <davidjohngagne@gmail.com>
Date: Tue, 6 Dec 2022 14:24:26 -0700
Subject: [PATCH 2/3] Added setup.cfg file and updated requirements to reflect
 libraries being imported by echo-opt.

---
 LICENSE          |  2 +-
 echo/VERSION     |  1 +
 environment.yml  |  6 ------
 requirements.txt |  8 ++++++++
 setup.cfg        | 47 +++++++++++++++++++++++++++++++++++++++++++++++
 setup.py         | 13 ++-----------
 6 files changed, 59 insertions(+), 18 deletions(-)
 create mode 100644 echo/VERSION
 create mode 100644 setup.cfg

diff --git a/LICENSE b/LICENSE
index 999c82f..ca29379 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2021 National Center for Atmospheric Research
+Copyright (c) 2021 University Corporation for Atmospheric Research
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
diff --git a/echo/VERSION b/echo/VERSION
new file mode 100644
index 0000000..ceab6e1
--- /dev/null
+++ b/echo/VERSION
@@ -0,0 +1 @@
+0.1
\ No newline at end of file
diff --git a/environment.yml b/environment.yml
index 7cf3360..1b2415e 100644
--- a/environment.yml
+++ b/environment.yml
@@ -11,18 +11,12 @@ dependencies:
   - numpy
   - scipy
   - matplotlib
-  - seaborn
-  - xarray
-  - netcdf4
-  - tqdm
-  - dask
   - scikit-learn
   - jupyter
   - jupyterlab
   - jupyter_server
   - distributed
   - pip
-  - s3fs
   - pyarrow
   - pytorch
   - torchvision
diff --git a/requirements.txt b/requirements.txt
index 196aec4..5bb4a0d 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,5 +1,13 @@
 numpy
 scipy
 matplotlib
+pandas
 optuna
 setuptools
+pyyaml
+scikit-learn
+tensorflow
+pytorch
+xgboost
+torchvision
+pyarrow
\ No newline at end of file
diff --git a/setup.cfg b/setup.cfg
new file mode 100644
index 0000000..09d4e31
--- /dev/null
+++ b/setup.cfg
@@ -0,0 +1,47 @@
+[metadata]
+name = echo-opt
+description = Earth Computer Hyperparameter Optimization: Distributed hyperparameter optimization on HPC and GPU systems with analysis tools.
+long_description = file: README.md
+long_description_content_type = text/markdown
+author = John Schreck
+author_email = schreck@ucar.edu
+license = MIT
+license_file = LICENSE
+platform = any
+version = file: echo/VERSION
+keywords = machine-learning, hyperparameter, gpu
+classifiers =
+    Programming Language :: Python
+    Programming Language :: Python :: 3.8
+    Programming Language :: Python :: 3.9
+    Programming Language :: Python :: 3.10
+url = https://github.com/NCAR/echo-opt
+
+[options]
+zip_safe = True
+packages =
+    echo
+    echo.src
+include_package_data = True
+setup_requires = setuptools
+python_requires = >=3.7
+install_requires =
+    numpy
+    scipy
+    matplotlib
+    optuna
+    setuptools
+    pandas
+    scikit-learn
+    tensorflow
+    pytorch
+    xgboost
+    torchvision
+    pyarrow
+    pyyaml
+
+[options.entry_points]
+console_scripts =
+    echo-opt = echo.optimize:main
+    echo-run = echo.run:main
+    echo-report = echo.report:main
diff --git a/setup.py b/setup.py
index 3ff28fe..7f1a176 100644
--- a/setup.py
+++ b/setup.py
@@ -1,13 +1,4 @@
 from setuptools import setup
 
-setup(name="echo-opt",
-      version="0.1",
-      description="Earth Computer Hyperparameter Optimization",
-      author="John Schreck, David John Gagne, Charlie Becker, Gabrielle Gantos, Keely Lawrence",
-      license="MIT",
-      url="https://github.com/NCAR/echo-opt",
-      packages=["echo", "echo/src"],
-      entry_points = {
-        'console_scripts': ['echo-opt=echo.optimize:main', 'echo-run=echo.run:main', 'echo-report=echo.report:main'],
-      }
-      )
\ No newline at end of file
+if __name__ == "__main__":
+    setup()

From 3a2d8ee1551136b7ca4afa5b06d0b8c4674cc79e Mon Sep 17 00:00:00 2001
From: David John Gagne <davidjohngagne@gmail.com>
Date: Tue, 6 Dec 2022 14:42:06 -0700
Subject: [PATCH 3/3] Fixed pip install requirements to use torch instead of
 pytorch

---
 requirements.txt | 2 +-
 setup.cfg        | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 5bb4a0d..050b7c8 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -7,7 +7,7 @@ setuptools
 pyyaml
 scikit-learn
 tensorflow
-pytorch
+torch
 xgboost
 torchvision
 pyarrow
\ No newline at end of file
diff --git a/setup.cfg b/setup.cfg
index 09d4e31..3b13b40 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -34,7 +34,7 @@ install_requires =
     pandas
     scikit-learn
     tensorflow
-    pytorch
+    torch
     xgboost
     torchvision
     pyarrow