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options.yml
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aklimate:
ACC:
- TOP
- MULTI
- CNVR
- METH
BLCA:
- TOP
- MULTI
- GEXP
- CNVR
- METH
BRCA:
- TOP
- MULTI
- GEXP
- CNVR
- METH
CESC:
- TOP
- MULTI
- GEXP
- CNVR
- METH
COADREAD:
- TOP
- MULTI
- GEXP
- CNVR
- METH
ESCC:
- TOP
- MULTI
- GEXP
- CNVR
- METH
GEA:
- TOP
- MULTI
- GEXP
- CNVR
- METH
HNSC:
- TOP
- MULTI
- GEXP
- CNVR
- METH
KIRCKICH:
- TOP
- MULTI
- GEXP
- CNVR
- METH
KIRP:
- TOP
- MULTI
- GEXP
- CNVR
- METH
LGGGBM:
- TOP
- MULTI
- GEXP
- CNVR
- METH
LIHCCHOL:
- TOP
- MULTI
- GEXP
- CNVR
- METH
LUAD:
- TOP
- MULTI
- GEXP
- CNVR
- METH
LUSC:
- TOP
- MULTI
- GEXP
- CNVR
- METH
MESO:
- TOP
- MULTI
- GEXP
- CNVR
- METH
OV:
- TOP
- GEXP
- CNVR
- METH
PAAD:
- TOP
- GEXP
- MULTI
- CNVR
- METH
PCPG:
- TOP
- MULTI
- GEXP
- CNVR
- METH
PRAD:
- TOP
- MULTI
- GEXP
- CNVR
- METH
SARC:
- TOP
- MULTI
- GEXP
- CNVR
- METH
SKCM:
- TOP
- MULTI
- GEXP
- CNVR
- METH
TGCT:
- TOP
- MULTI
- GEXP
- CNVR
- METH
THCA:
- TOP
- MULTI
- GEXP
- CNVR
- METH
THYM:
- TOP
- MULTI
- GEXP
- CNVR
- METH
UCEC:
- TOP
- MULTI
- GEXP
- CNVR
- METH
UVM:
- TOP
- MULTI
- CNVR
- METH
cloudforest:
ACC:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
BLCA:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
BRCA:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
CESC:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
COADREAD:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
ESCC:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
GEA:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
HNSC:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
KIRCKICH:
- CNVR
- GEXP
- METH
- All
- MUTA
- OVERALL
KIRP:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
LGGGBM:
- CNVR
- GEXP
- METH
- All
- MUTA
- OVERALL
LIHCCHOL:
- CNVR
- GEXP
- METH
- All
- MUTA
- OVERALL
LUAD:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
LUSC:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
MESO:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
OV:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
PAAD:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
PCPG:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
PRAD:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
SARC:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
SKCM:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
TGCT:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
THCA:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
THYM:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
UCEC:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
UVM:
- CNVR
- GEXP
- METH
- All
- MUTA
- MIR
- OVERALL
jadbio:
ACC:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
BLCA:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
BRCA:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
CESC:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
COADREAD:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
ESCC:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
GEA:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
HNSC:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
KIRCKICH:
- CNVR
- GEXP
- METH
- MULTI
- MUTA
KIRP:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
LGGGBM:
- CNVR
- GEXP
- METH
- MULTI
- MUTA
LIHCCHOL:
- CNVR
- GEXP
- METH
- MULTI
- MUTA
LUAD:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
LUSC:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
MESO:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
OV:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
PAAD:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
PCPG:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
PRAD:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
SARC:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
SKCM:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
TGCT:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
THCA:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
THYM:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
UCEC:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
UVM:
- CNVR
- GEXP
- METH
- MIR
- MULTI
- MUTA
skgrid:
ACC:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
BLCA:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
BRCA:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
CESC:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
COADREAD:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
ESCC:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
GEA:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
HNSC:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
KIRCKICH:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
KIRP:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
LGGGBM:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
LIHCCHOL:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
LUAD:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
LUSC:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
MESO:
- OVERALL
- GEXP
- CNVR
- METH
- MIR
OV:
- OVERALL
- GEXP
- CNVR
- METH
- MIR
PAAD:
- OVERALL
- GEXP
- CNVR
- METH
- MIR
PCPG:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
PRAD:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
SARC:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
SKCM:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
TGCT:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
THCA:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
THYM:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
UCEC:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
UVM:
- OVERALL
- GEXP
- CNVR
- METH
- MUTA
- MIR
subscope:
ACC:
- GEXP
- CNVR
- METH
- MUTA
- MIR
BLCA:
- GEXP
- CNVR
- METH
- MUTA
- MIR
BRCA:
- GEXP
- CNVR
- METH
- MUTA
- MIR
CESC:
- GEXP
- CNVR
- METH
- MUTA
- MIR
COADREAD:
- GEXP
- CNVR
- METH
- MUTA
- MIR
ESCC:
- GEXP
- CNVR
- METH
- MUTA
- MIR
GEA:
- GEXP
- CNVR
- METH
- MUTA
- MIR
HNSC:
- GEXP
- CNVR
- METH
- MUTA
- MIR
KIRCKICH:
- GEXP
- CNVR
- METH
- MUTA
KIRP:
- GEXP
- CNVR
- METH
- MUTA
- MIR
LGGGBM:
- GEXP
- CNVR
- METH
- MUTA
- MIR
LIHCCHOL:
- GEXP
- CNVR
- METH
- MUTA
LUAD:
- GEXP
- CNVR
- METH
- MUTA
- MIR
LUSC:
- GEXP
- CNVR
- METH
- MUTA
- MIR
MESO:
- GEXP
- CNVR
- METH
- MUTA
- MIR
OV:
- GEXP
- CNVR
- METH
- MUTA
- MIR
PAAD:
- GEXP
- CNVR
- METH
- MUTA
- MIR
PCPG:
- GEXP
- CNVR
- METH
- MUTA
- MIR
PRAD:
- GEXP
- CNVR
- METH
- MUTA
- MIR
SARC:
- GEXP
- CNVR
- METH
- MUTA
- MIR
SKCM:
- GEXP
- CNVR
- METH
- MUTA
- MIR
TGCT:
- GEXP
- CNVR
- METH
- MUTA
- MIR
THCA:
- GEXP
- CNVR
- METH
- MUTA
- MIR
THYM:
- GEXP
- CNVR
- METH
- MUTA
- MIR
UCEC:
- GEXP
- CNVR
- METH
- MUTA
- MIR
UVM:
- GEXP
- CNVR
- METH
- MUTA
- MIR
allcohorts:
- GEXP
- CNVR
- METH
- MUTA
- MIR