Process 'SpecLibGen' finished, exit code: 1 Process returned non-zero exit code, stopping

[lzw150]

delete_intermediate_files D:\LZW\Guomics\DIA-BERT\Benchmark\NC_review\lzw\Yeast_lib_build_FragPipe\Lib\filelist_speclibgen.txt
Traceback (most recent call last):
File "D:\LZW\Packages\FragPipe-22.0\fragpipe\tools\speclib\gen_con_spec_lib.py", line 19, in
import scipy.interpolate
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python39\lib\site-packages\scipy\interpolate_init_.py", line 167, in
from ._interpolate import *
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python39\lib\site-packages\scipy\interpolate_interpolate.py", line 14, in
from . import _fitpack_py
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python39\lib\site-packages\scipy\interpolate_fitpack_py.py", line 8, in
from ._fitpack_impl import bisplrep, bisplev, dblint # noqa: F401
File "C:\Users\Administrator\AppData\Local\Programs\Python\Python39\lib\site-packages\scipy\interpolate_fitpack_impl.py", line 103, in
'iwrk': array([], dfitpack_int), 'u': array([], float),
TypeError
Process 'SpecLibGen' finished, exit code: 1
Process returned non-zero exit code, stopping

Cancelling 1 remaining tasks

[fcyu]

Could you share the whole log file?

Thanks,

Fengchao

[lzw150]

log_2025-01-14_10-29-49.txt
Here is the whole log file. Thanks for your quick response.

Jack

[fcyu]

Thanks for sharing the file. Guo Ci @guoci , could you take a look?

Thanks,

Fengchao

[guoci]

@lzw150 you are using numpy 2. You can uninstall it then install numpy 1 with the following in Python.
Execute in a command prompt:
C:\Users\Administrator\AppData\Local\Programs\Python\Python39\python
then in the Python prompt do:

pip uninstall numpy
pip install numpy==1.26.4