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base repository: NickJD/StORF-Reporter
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base: v1.2.0
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head repository: NickJD/StORF-Reporter
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compare: master
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  • 10 commits
  • 84 files changed
  • 1 contributor

Commits on Dec 20, 2023

  1. v1.3.0: 'Multiple_Out_Dirs' option added

    StORF-Reporter can now be run on a directory containing multiple Prokka/Bakta output directories.
    Nick Dimonaco committed Dec 20, 2023
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Commits on Jan 21, 2024

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Commits on Feb 7, 2024

  1. v1.3.2: Fixed an issue with the hashing of the StORF IDs.

    The hashing of StORF IDs may have been different between GFF/DNA and the AA outputs. Now the hashing takes the GFF input filename or in the case of a Pyrodigal run, will take the input FASTA filename.
    NickJD committed Feb 7, 2024
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Commits on Feb 8, 2024

  1. v1.3.3: Fixed Con-StORFs middle stop and more IO errors.

    * Fixed - Con-StORFs were incorrectly being reported with middle '*' when 'remove_stop' was set to True (default)
    * Fixed - In some instances, when using -odir with 'Multiple_Genomes', 'Multiple_Combined_GFFs' or 'Multiple_GFFs', the input directory name was being applied to the output filename.
    NickJD committed Feb 8, 2024
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Commits on Feb 26, 2024

  1. v1.3.4: Some minor changes to UR-Extractor output handling

    UR-Extractor now conforms better to 'standard' FASTA and GFF formats.
    Added 'Multi_Contig_Genome' test directory for testing fragmented genomes.
    Nick Dimonaco committed Feb 26, 2024
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Commits on Sep 22, 2024

  1. v1.4.0: StORFs now rejected for non-standard NTs & minor bug fixes

    v1.4.0: New user option '-non_standard' that by default removes StORFs with more than 20% non-standard nucleotides (X's etc) and a number of small but impactful bug fixes and speedups.
    Nick Dimonaco committed Sep 22, 2024
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Commits on Sep 25, 2024

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Commits on Oct 23, 2024

  1. v1.4.2: Clean error messages | fixed -spos parameter

    Nick Dimonaco committed Oct 23, 2024
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Commits on Nov 13, 2024

  1. intermediate commit for next release

    Nick Dimonaco committed Nov 13, 2024
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Commits on Nov 14, 2024

  1. v1.4.3: Minor fixes including user input and UI improvements.

    More details will be provided in the release documentation
    Nick Dimonaco committed Nov 14, 2024
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