-
Notifications
You must be signed in to change notification settings - Fork 1
Comparing changes
Open a pull request
base repository: NickJD/StORF-Reporter
base: v1.2.0
head repository: NickJD/StORF-Reporter
compare: master
- 10 commits
- 84 files changed
- 1 contributor
Commits on Dec 20, 2023
-
v1.3.0: 'Multiple_Out_Dirs' option added
StORF-Reporter can now be run on a directory containing multiple Prokka/Bakta output directories.
Nick Dimonaco committedDec 20, 2023 Configuration menu - View commit details
-
Copy full SHA for a2856e8 - Browse repository at this point
Copy the full SHA a2856e8View commit details
Commits on Jan 21, 2024
-
v1.3.1: Fixed FASTA output and empty dir handling for Multiple_Out_Dirs
Nick Dimonaco committedJan 21, 2024 Configuration menu - View commit details
-
Copy full SHA for 7915c28 - Browse repository at this point
Copy the full SHA 7915c28View commit details
Commits on Feb 7, 2024
-
v1.3.2: Fixed an issue with the hashing of the StORF IDs.
The hashing of StORF IDs may have been different between GFF/DNA and the AA outputs. Now the hashing takes the GFF input filename or in the case of a Pyrodigal run, will take the input FASTA filename.
NickJD committedFeb 7, 2024 Configuration menu - View commit details
-
Copy full SHA for a89e774 - Browse repository at this point
Copy the full SHA a89e774View commit details
Commits on Feb 8, 2024
-
v1.3.3: Fixed Con-StORFs middle stop and more IO errors.
* Fixed - Con-StORFs were incorrectly being reported with middle '*' when 'remove_stop' was set to True (default) * Fixed - In some instances, when using -odir with 'Multiple_Genomes', 'Multiple_Combined_GFFs' or 'Multiple_GFFs', the input directory name was being applied to the output filename.
NickJD committedFeb 8, 2024 Configuration menu - View commit details
-
Copy full SHA for 4ec5872 - Browse repository at this point
Copy the full SHA 4ec5872View commit details
Commits on Feb 26, 2024
-
v1.3.4: Some minor changes to UR-Extractor output handling
UR-Extractor now conforms better to 'standard' FASTA and GFF formats. Added 'Multi_Contig_Genome' test directory for testing fragmented genomes.
Nick Dimonaco committedFeb 26, 2024 Configuration menu - View commit details
-
Copy full SHA for 427110b - Browse repository at this point
Copy the full SHA 427110bView commit details
Commits on Sep 22, 2024
-
v1.4.0: StORFs now rejected for non-standard NTs & minor bug fixes
v1.4.0: New user option '-non_standard' that by default removes StORFs with more than 20% non-standard nucleotides (X's etc) and a number of small but impactful bug fixes and speedups.
Nick Dimonaco committedSep 22, 2024 Configuration menu - View commit details
-
Copy full SHA for 5688379 - Browse repository at this point
Copy the full SHA 5688379View commit details
Commits on Sep 25, 2024
-
v1.4.1: Minor bug fixes for 'empty' contig handling and StORF filtering
Nick Dimonaco committedSep 25, 2024 Configuration menu - View commit details
-
Copy full SHA for 48d25c1 - Browse repository at this point
Copy the full SHA 48d25c1View commit details
Commits on Oct 23, 2024
-
v1.4.2: Clean error messages | fixed -spos parameter
Nick Dimonaco committedOct 23, 2024 Configuration menu - View commit details
-
Copy full SHA for da20d00 - Browse repository at this point
Copy the full SHA da20d00View commit details
Commits on Nov 13, 2024
-
intermediate commit for next release
Nick Dimonaco committedNov 13, 2024 Configuration menu - View commit details
-
Copy full SHA for 4af568a - Browse repository at this point
Copy the full SHA 4af568aView commit details
Commits on Nov 14, 2024
-
v1.4.3: Minor fixes including user input and UI improvements.
More details will be provided in the release documentation
Nick Dimonaco committedNov 14, 2024 Configuration menu - View commit details
-
Copy full SHA for b140227 - Browse repository at this point
Copy the full SHA b140227View commit details
This comparison is taking too long to generate.
Unfortunately it looks like we can’t render this comparison for you right now. It might be too big, or there might be something weird with your repository.
You can try running this command locally to see the comparison on your machine:
git diff v1.2.0...master