NAMESPACE

# Generated by roxygen2: do not edit by hand

export(add_mods)
export(align_rt)
export(annotate_Nterm_acetyls)
export(annotate_masses)
export(annotate_modifications)
export(apply_evalue_cutoff)
export(augment_annotation)
export(calc_error)
export(cluster)
export(compute_fdr)
export(create_mdata)
export(create_mod_data)
export(create_msnset)
export(create_pcg)
export(data_pf)
export(filter_by_count)
export(find_evalue_cutoff)
export(find_ref_ds)
export(form_model)
export(get_distinct_mods)
export(get_mass_annotation_table)
export(get_mods_counts)
export(infer_prot)
export(map_proteoform)
export(match_features)
export(plot_acc)
export(plot_accession_ptm)
export(plot_accession_wgcna)
export(plot_fragments)
export(plot_pform_sig)
export(plot_pform_sig_soft)
export(read_TopPIC_DMS)
export(read_toppic)
export(recalibrate_mass)
export(remove_a_mod)
export(remove_decoys)
export(retain_one_mod)
export(rm_false_gene)
export(set_pf_level)
import(data.table)
importFrom(dplyr,bind_rows)
importFrom(foreach,`%dopar%`)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(magrittr,"%>%")
importFrom(scales,log_breaks)
importFrom(scales,pretty_breaks)
importFrom(scales,trans_new)