From 32e970e1cfef792ed7478e2236e1ab6e13374721 Mon Sep 17 00:00:00 2001 From: Paul Hoffman Date: Wed, 4 Dec 2019 16:16:57 -0500 Subject: [PATCH] Fix tests for loading 10X Visium data --- .../testdata/visium/spatial/scalefactors_json.json | 0 .../testdata/visium/spatial/tissue_lowres_image.png | Bin ...positions_list.txt => tissue_positions_list.csv} | 0 tests/testthat/test_load_10X.R | 2 +- 4 files changed, 1 insertion(+), 1 deletion(-) mode change 100755 => 100644 tests/testdata/visium/spatial/scalefactors_json.json mode change 100755 => 100644 tests/testdata/visium/spatial/tissue_lowres_image.png rename tests/testdata/visium/spatial/{tissue_positions_list.txt => tissue_positions_list.csv} (100%) mode change 100755 => 100644 diff --git a/tests/testdata/visium/spatial/scalefactors_json.json b/tests/testdata/visium/spatial/scalefactors_json.json old mode 100755 new mode 100644 diff --git a/tests/testdata/visium/spatial/tissue_lowres_image.png b/tests/testdata/visium/spatial/tissue_lowres_image.png old mode 100755 new mode 100644 diff --git a/tests/testdata/visium/spatial/tissue_positions_list.txt b/tests/testdata/visium/spatial/tissue_positions_list.csv old mode 100755 new mode 100644 similarity index 100% rename from tests/testdata/visium/spatial/tissue_positions_list.txt rename to tests/testdata/visium/spatial/tissue_positions_list.csv diff --git a/tests/testthat/test_load_10X.R b/tests/testthat/test_load_10X.R index d2038b730..a9e9b884b 100644 --- a/tests/testthat/test_load_10X.R +++ b/tests/testthat/test_load_10X.R @@ -38,7 +38,7 @@ test_that("10x Spatial Data Parsing", { expect_equal(ncol(x = txsp), 2695) expect_equal(nrow(x = txsp), 100) expect_equal(Cells(x = txsp)[1], "AAACAAGTATCTCCCA-1") - expect_equal(names(x = txsp), "Spatial") + expect_equal(Assays(object = txsp), "Spatial") expect_equal(GetAssayData(object = txsp[["Spatial"]], slot = "counts")[5, 9], 1) })