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.readthedocs.yaml
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version: 2
build:
os: ubuntu-20.04
apt_packages:
- mesa-common-dev
- libglu1-mesa-dev
- rsync
tools:
python: "3.11"
jobs:
post_checkout:
- git fetch --unshallow
post_install:
- curl https://cxtoolshed.rbvi.ucsf.edu/prereqs/grako/grako-3.16.5-py2.py3-none-any.whl --output grako-3.16.5-py2.py3-none-any.whl && python -I -m pip install ./grako-3.16.5-py2.py3-none-any.whl
- python -I -m pip install setuptools==65.1.1 Cython
- python -I -m pip install prereqs/qtshim
- python -I -m pip install PyQt6 PyQt6-WebEngine sphinx sphinx-autodoc-typehints
- python -I -m pip install sortedcontainers filelock appdirs pkginfo lxml msgpack
- python -I -m pip install build wheel numpy tinyarray pillow
- BUILD_AND_INSTALL=1 PYTHON=python make -C src/bundles/bundle_builder install-editable
- BUILD_AND_INSTALL=1 PYTHON=python make -C src/bundles/toolshed_utils install-editable
- BUILD_AND_INSTALL=1 PYTHON=python make -C src/bundles/core install-editable
- cd src/bundles/arrays && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/segment && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/sim_matrices && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/alignment_algs && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/atomic_lib && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/coulombic && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/geometry && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/graphics && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/map && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/mask && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/mlp && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/morph && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/realsense && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/stl && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/surface && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/webcam && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/atom_search && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/chem_group && python make_selectors.py && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/connect_structure && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/dssp && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/pdb_lib && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
# No idea why we need to toolshed reload installed here.
- python -I -m chimerax.core --nogui --exit --safemode --cmd "toolshed reload installed"
- cd src/bundles/mmcif && make lib && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/mmtf && make mmtf-cpp-1.1.0 && make msgpack-c-cpp-4.1.2 && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/pdb && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- cd src/bundles/atomic && python -m chimerax.bundle_builder -c bundle_info.xml > pyproject.toml && rm bundle_info.xml && python -m pip install --no-deps --no-build-isolation --editable . && cd -
- make -C docs/devel conf.py
- make -C docs/devel index.rst
- make -C docs/devel _static/cxlinks.js
- make -C docs/devel _static/devdocs.css
- mv docs/devel .
- rm -rf docs
- mv devel docs
- DEV_DOCS_IN_ROOT=1 ./utils/build/doc_symlinks.sh
sphinx:
builder: "html"
configuration: "docs/conf.py"