From 6ff9e5fcf4237660c19d1f1a2fc1171c05611013 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 13 Oct 2022 02:29:00 +0000 Subject: [PATCH] Bump numpy from 1.20.1 to 1.23.4 in /ml-env Bumps [numpy](https://github.com/numpy/numpy) from 1.20.1 to 1.23.4. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v1.20.1...v1.23.4) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- ml-env/poetry.lock | 190 ++++++++++++++++++++++++++------------------- 1 file changed, 110 insertions(+), 80 deletions(-) diff --git a/ml-env/poetry.lock b/ml-env/poetry.lock index 07016f6..6d4c148 100644 --- a/ml-env/poetry.lock +++ b/ml-env/poetry.lock @@ -13,9 +13,9 @@ sortedcollections = ">=1.1" sortedcontainers = ">=2.0" [package.extras] -notebook = ["ipython", "ipykernel (>=4.8.0)", "jupyter-client (>=5.2.2)", "holoviews (>=1.9.1)", "ipywidgets", "bokeh", "matplotlib", "plotly"] -other = ["cloudpickle", "dill", "distributed", "ipyparallel (>=6.2.5)", "loky", "scikit-optimize", "scikit-learn (<=0.23.1)", "pexpect"] -testing = ["flaky", "pytest", "pytest-cov", "pytest-randomly", "pytest-timeout", "pre-commit"] +notebook = ["bokeh", "holoviews (>=1.9.1)", "ipykernel (>=4.8.0)", "ipython", "ipywidgets", "jupyter-client (>=5.2.2)", "matplotlib", "plotly"] +other = ["cloudpickle", "dill", "distributed", "ipyparallel (>=6.2.5)", "loky", "pexpect", "scikit-learn (<=0.23.1)", "scikit-optimize"] +testing = ["flaky", "pre-commit", "pytest", "pytest-cov", "pytest-randomly", "pytest-timeout"] [[package]] name = "appdirs" @@ -46,7 +46,7 @@ cffi = ">=1.0.0" six = "*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "wheel", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pre-commit", "pytest", "sphinx", "wheel"] docs = ["sphinx"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] @@ -75,10 +75,10 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "furo", "hypothesis", "pre-commit", "pympler", "pytest (>=4.3.0)", "six", "sphinx", "zope.interface"] docs = ["furo", "sphinx", "zope.interface"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] +tests-no-zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] [[package]] name = "backcall" @@ -201,9 +201,9 @@ pyyaml = "*" [package.extras] array = ["numpy (>=1.15.1)", "toolz (>=0.8.2)"] -bag = ["cloudpickle (>=0.2.2)", "fsspec (>=0.6.0)", "toolz (>=0.8.2)", "partd (>=0.3.10)"] +bag = ["cloudpickle (>=0.2.2)", "fsspec (>=0.6.0)", "partd (>=0.3.10)", "toolz (>=0.8.2)"] complete = ["bokeh (>=1.0.0,!=2.0.0)", "cloudpickle (>=0.2.2)", "distributed (>=2.0)", "fsspec (>=0.6.0)", "numpy (>=1.15.1)", "pandas (>=0.25.0)", "partd (>=0.3.10)", "toolz (>=0.8.2)"] -dataframe = ["numpy (>=1.15.1)", "pandas (>=0.25.0)", "toolz (>=0.8.2)", "partd (>=0.3.10)", "fsspec (>=0.6.0)"] +dataframe = ["fsspec (>=0.6.0)", "numpy (>=1.15.1)", "pandas (>=0.25.0)", "partd (>=0.3.10)", "toolz (>=0.8.2)"] delayed = ["cloudpickle (>=0.2.2)", "toolz (>=0.8.2)"] diagnostics = ["bokeh (>=1.0.0,!=2.0.0)"] distributed = ["distributed (>=2.0)"] @@ -344,7 +344,7 @@ tornado = ">=4.2" traitlets = ">=4.1.0" [package.extras] -test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "jedi (<=0.17.2)"] +test = ["flaky", "jedi (<=0.17.2)", "nose", "pytest (!=5.3.4)", "pytest-cov"] [[package]] name = "ipython" @@ -364,6 +364,7 @@ pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" +setuptools = ">=18.5" traitlets = ">=4.2" [package.extras] @@ -372,10 +373,10 @@ doc = ["Sphinx (>=1.3)"] kernel = ["ipykernel"] nbconvert = ["nbconvert"] nbformat = ["nbformat"] -notebook = ["notebook", "ipywidgets"] +notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] -test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.14)"] +test = ["ipykernel", "nbformat", "nose (>=0.10.1)", "numpy (>=1.14)", "pygments", "requests", "testpath"] [[package]] name = "ipython-genutils" @@ -402,7 +403,7 @@ traitlets = ">=4.3.1" widgetsnbextension = ">=3.5.0,<3.6.0" [package.extras] -test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] +test = ["mock", "pytest (>=3.6.0)", "pytest-cov"] [[package]] name = "jedi" @@ -463,11 +464,12 @@ python-versions = "*" [package.dependencies] attrs = ">=17.4.0" pyrsistent = ">=0.14.0" +setuptools = "*" six = ">=1.11.0" [package.extras] format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"] -format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"] +format-nongpl = ["idna", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "webcolors"] [[package]] name = "jupyter-client" @@ -486,7 +488,7 @@ traitlets = "*" [package.extras] doc = ["sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] -test = ["jedi (<=0.17.2)", "ipykernel", "ipython", "mock", "pytest", "pytest-asyncio", "async-generator", "pytest-timeout"] +test = ["async-generator", "ipykernel", "ipython", "jedi (<=0.17.2)", "mock", "pytest", "pytest-asyncio", "pytest-timeout"] [[package]] name = "jupyter-core" @@ -515,8 +517,8 @@ notebook = ">=4.3.1" tornado = "<6.0.0 || >6.0.0,<6.0.1 || >6.0.1,<6.0.2 || >6.0.2" [package.extras] -docs = ["jsx-lexer", "recommonmark", "sphinx", "sphinx-rtd-theme", "sphinx-copybutton"] -test = ["pytest", "pytest-check-links", "requests", "wheel", "virtualenv"] +docs = ["jsx-lexer", "recommonmark", "sphinx", "sphinx-copybutton", "sphinx-rtd-theme"] +test = ["pytest", "pytest-check-links", "requests", "virtualenv", "wheel"] [[package]] name = "jupyterlab-pygments" @@ -575,9 +577,9 @@ python-versions = "*" IPython = "*" [package.extras] -all = ["ipython", "cython", "scikit-build", "cmake", "ninja", "pytest", "pytest-cov", "coverage", "codecov", "ubelt"] -build = ["cython", "scikit-build", "cmake", "ninja"] -tests = ["pytest", "pytest-cov", "coverage", "codecov", "ubelt"] +all = ["Cython", "IPython", "cmake", "codecov", "coverage", "ninja", "pytest", "pytest-cov", "scikit-build", "ubelt"] +build = ["Cython", "cmake", "ninja", "scikit-build"] +tests = ["codecov", "coverage", "pytest", "pytest-cov", "ubelt"] [[package]] name = "llvmlite" @@ -643,9 +645,9 @@ nest-asyncio = "*" traitlets = ">=4.2" [package.extras] -dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] -sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +dev = ["black", "bumpversion", "check-manifest", "codecov", "coverage", "flake8", "ipykernel", "ipython", "ipywidgets", "mypy", "pip (>=18.1)", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "setuptools (>=38.6.0)", "tox", "twine (>=1.11.0)", "wheel (>=0.31.0)", "xmltodict"] +sphinx = ["Sphinx (>=1.7)", "mock", "moto", "myst-parser", "sphinx-book-theme"] +test = ["black", "bumpversion", "check-manifest", "codecov", "coverage", "flake8", "ipykernel", "ipython", "ipywidgets", "mypy", "pip (>=18.1)", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "setuptools (>=38.6.0)", "tox", "twine (>=1.11.0)", "wheel (>=0.31.0)", "xmltodict"] [[package]] name = "nbconvert" @@ -671,10 +673,10 @@ testpath = "*" traitlets = ">=4.2" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] -docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["ipykernel", "ipython", "ipywidgets (>=7)", "nbsphinx (>=0.2.12)", "pyppeteer (==0.2.2)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "tornado (>=4.0)"] +docs = ["ipython", "nbsphinx (>=0.2.12)", "sphinx (>=1.5.1)", "sphinx-rtd-theme"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)"] +test = ["ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)", "pytest", "pytest-cov", "pytest-dependency"] webpdf = ["pyppeteer (==0.2.2)"] [[package]] @@ -697,8 +699,8 @@ six = "*" tornado = "*" [package.extras] -docs = ["sphinx", "recommonmark", "sphinx-rtd-theme"] -test = ["pytest (>=3.6)", "pytest-cov", "pytest-timeout", "pytest-tornado", "jsonschema", "mock", "requests", "tabulate"] +docs = ["recommonmark", "sphinx", "sphinx-rtd-theme"] +test = ["jsonschema", "mock", "pytest (>=3.6)", "pytest-cov", "pytest-timeout", "pytest-tornado", "requests", "tabulate"] [[package]] name = "nbformat" @@ -716,7 +718,7 @@ traitlets = ">=4.1" [package.extras] fast = ["fastjsonschema"] -test = ["check-manifest", "fastjsonschema", "testpath", "pytest", "pytest-cov"] +test = ["check-manifest", "fastjsonschema", "pytest", "pytest-cov", "testpath"] [[package]] name = "nbqa" @@ -753,7 +755,7 @@ python-versions = ">=3.6" decorator = ">=4.3.0" [package.extras] -all = ["numpy", "scipy", "pandas", "matplotlib", "pygraphviz", "pydot", "pyyaml", "lxml", "pytest"] +all = ["lxml", "matplotlib", "numpy", "pandas", "pydot", "pygraphviz", "pytest", "pyyaml", "scipy"] gdal = ["gdal"] lxml = ["lxml"] matplotlib = ["matplotlib"] @@ -790,9 +792,9 @@ tornado = ">=6.1" traitlets = ">=4.2.1" [package.extras] -docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme"] +docs = ["nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] json-logging = ["json-logging"] -test = ["pytest", "coverage", "requests", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] +test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixsocket", "selenium"] [[package]] name = "numba" @@ -805,6 +807,7 @@ python-versions = ">=3.6" [package.dependencies] llvmlite = ">=0.34.0.dev0,<0.35" numpy = ">=1.15" +setuptools = "*" [[package]] name = "numexpr" @@ -819,11 +822,11 @@ numpy = ">=1.7" [[package]] name = "numpy" -version = "1.20.1" +version = "1.23.4" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [[package]] name = "packaging" @@ -850,7 +853,7 @@ python-dateutil = ">=2.7.3" pytz = ">=2017.3" [package.extras] -test = ["pytest (>=5.0.1)", "pytest-xdist", "hypothesis (>=3.58)"] +test = ["hypothesis (>=3.58)", "pytest (>=5.0.1)", "pytest-xdist"] [[package]] name = "pandocfilters" @@ -1041,7 +1044,7 @@ coverage = ">=5.2.1" pytest = ">=4.6" [package.extras] -testing = ["fields", "hunter", "process-tests (==2.0.2)", "six", "pytest-xdist", "virtualenv"] +testing = ["fields", "hunter", "process-tests (==2.0.2)", "pytest-xdist", "six", "virtualenv"] [[package]] name = "pytest-flakes" @@ -1144,7 +1147,7 @@ idna = ">=2.5,<3" urllib3 = ">=1.21.1,<1.27" [package.extras] -security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] +security = ["cryptography (>=1.3.4)", "pyOpenSSL (>=0.14)"] socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] [[package]] @@ -1177,9 +1180,9 @@ scipy = ">=1.0.1" tifffile = ">=2019.7.26" [package.extras] -docs = ["sphinx (>=1.8,<=2.4.4)", "numpydoc (>=0.9)", "sphinx-gallery (>=0.3.1)", "sphinx-copybutton", "pytest-runner", "scikit-learn", "matplotlib (>=3.0.1)", "dask[array] (>=0.15.0)", "cloudpickle (>=0.2.1)", "pandas (>=0.23.0)", "seaborn (>=0.7.1)", "pooch (>=0.5.2)"] -optional = ["simpleitk", "astropy (>=1.2.0)", "qtpy", "pyamg", "dask[array] (>=0.15.0)", "cloudpickle (>=0.2.1)", "pooch (>=0.5.2)"] -test = ["pytest (!=3.7.3)", "pytest-cov", "pytest-localserver", "flake8", "codecov"] +docs = ["cloudpickle (>=0.2.1)", "dask[array] (>=0.15.0)", "matplotlib (>=3.0.1)", "numpydoc (>=0.9)", "pandas (>=0.23.0)", "pooch (>=0.5.2)", "pytest-runner", "scikit-learn", "seaborn (>=0.7.1)", "sphinx (>=1.8,<=2.4.4)", "sphinx-copybutton", "sphinx-gallery (>=0.3.1)"] +optional = ["SimpleITK", "astropy (>=1.2.0)", "cloudpickle (>=0.2.1)", "dask[array] (>=0.15.0)", "pooch (>=0.5.2)", "pyamg", "qtpy"] +test = ["codecov", "flake8", "pytest (!=3.7.3)", "pytest-cov", "pytest-localserver"] [[package]] name = "scikit-learn" @@ -1231,6 +1234,19 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "setuptools" +version = "65.4.1" +description = "Easily download, build, install, upgrade, and uninstall Python packages" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] + [[package]] name = "six" version = "1.15.0" @@ -1276,15 +1292,15 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] mssql = ["pyodbc"] -mssql_pymssql = ["pymssql"] -mssql_pyodbc = ["pyodbc"] +mssql-pymssql = ["pymssql"] +mssql-pyodbc = ["pyodbc"] mysql = ["mysqlclient"] -oracle = ["cx-oracle"] +oracle = ["cx_oracle"] postgresql = ["psycopg2"] -postgresql_pg8000 = ["pg8000 (<1.16.6)"] -postgresql_psycopg2binary = ["psycopg2-binary"] -postgresql_psycopg2cffi = ["psycopg2cffi"] -pymysql = ["pymysql (<1)", "pymysql"] +postgresql-pg8000 = ["pg8000 (<1.16.6)"] +postgresql-psycopg2binary = ["psycopg2-binary"] +postgresql-psycopg2cffi = ["psycopg2cffi"] +pymysql = ["pymysql", "pymysql (<1)"] [[package]] name = "tables" @@ -1342,7 +1358,7 @@ python-versions = ">=3.7" numpy = ">=1.15.1" [package.extras] -all = ["imagecodecs (>=2021.1.11)", "matplotlib (>=3.2)", "lxml"] +all = ["imagecodecs (>=2021.1.11)", "lxml", "matplotlib (>=3.2)"] [[package]] name = "toml" @@ -1412,7 +1428,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" [package.extras] brotli = ["brotlipy (>=0.6.0)"] -secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] +secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] @@ -1453,14 +1469,15 @@ python-versions = ">=3.6" [package.dependencies] numpy = ">=1.15" pandas = ">=0.25" +setuptools = ">=38.4" [package.extras] -accel = ["scipy", "bottleneck", "numbagg"] -complete = ["netcdf4", "h5netcdf", "scipy", "pydap", "zarr", "fsspec", "cftime", "rasterio", "cfgrib", "bottleneck", "numbagg", "dask", "matplotlib", "seaborn", "nc-time-axis"] -docs = ["netcdf4", "h5netcdf", "scipy", "pydap", "zarr", "fsspec", "cftime", "rasterio", "cfgrib", "bottleneck", "numbagg", "dask", "matplotlib", "seaborn", "nc-time-axis", "sphinx-autosummary-accessors", "sphinx-rtd-theme", "ipython", "ipykernel", "jupyter-client", "nbsphinx", "scanpydoc"] -io = ["netcdf4", "h5netcdf", "scipy", "pydap", "zarr", "fsspec", "cftime", "rasterio", "cfgrib"] -parallel = ["dask"] -viz = ["matplotlib", "seaborn", "nc-time-axis"] +accel = ["bottleneck", "numbagg", "scipy"] +complete = ["bottleneck", "cfgrib", "cftime", "dask[complete]", "fsspec", "h5netcdf", "matplotlib", "nc-time-axis", "netCDF4", "numbagg", "pydap", "rasterio", "scipy", "seaborn", "zarr"] +docs = ["bottleneck", "cfgrib", "cftime", "dask[complete]", "fsspec", "h5netcdf", "ipykernel", "ipython", "jupyter-client", "matplotlib", "nbsphinx", "nc-time-axis", "netCDF4", "numbagg", "pydap", "rasterio", "scanpydoc", "scipy", "seaborn", "sphinx-autosummary-accessors", "sphinx-rtd-theme", "zarr"] +io = ["cfgrib", "cftime", "fsspec", "h5netcdf", "netCDF4", "pydap", "rasterio", "scipy", "zarr"] +parallel = ["dask[complete]"] +viz = ["matplotlib", "nc-time-axis", "seaborn"] [[package]] name = "xyzpy" @@ -1481,8 +1498,8 @@ tqdm = ">=4.7.6" xarray = ">=0.9.0" [package.extras] -docs = ["matplotlib", "bokeh", "sphinx", 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