diff --git a/DESCRIPTION b/DESCRIPTION index 0dbd7dd..47f7692 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -7,13 +7,13 @@ Description: The ability to efficiently represent and manipulate genomic intervals. Specialized containers for representing and manipulating short alignments against a reference genome are defined in the GenomicAlignments package. -Version: 1.17.38 +Version: 1.17.39 Author: P. Aboyoun, H. Pages and M. Lawrence Maintainer: Bioconductor Package Maintainer biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage, GenomeAnnotation Depends: R (>= 2.10), methods, BiocGenerics (>= 0.11.3), - S4Vectors (>= 0.2.0), IRanges (>= 1.99.26), GenomeInfoDb (>= 1.1.19) + S4Vectors (>= 0.2.2), IRanges (>= 1.99.27), GenomeInfoDb (>= 1.1.19) Imports: methods, utils, stats, BiocGenerics, IRanges, XVector LinkingTo: S4Vectors, IRanges Suggests: AnnotationDbi (>= 1.21.1), AnnotationHub, diff --git a/R/GenomicRangesList-class.R b/R/GenomicRangesList-class.R index 1d958a1..d2fe223 100644 --- a/R/GenomicRangesList-class.R +++ b/R/GenomicRangesList-class.R @@ -21,7 +21,7 @@ GenomicRangesList <- function(...) { args <- list(...) if (length(args) == 1 && is.list(args[[1]])) args <- args[[1]] - IRanges:::new_SimpleList_from_list("SimpleGenomicRangesList", args) + S4Vectors:::new_SimpleList_from_list("SimpleGenomicRangesList", args) } ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/man/SummarizedExperiment-class.Rd b/man/SummarizedExperiment-class.Rd index a9df67d..91a0cf5 100644 --- a/man/SummarizedExperiment-class.Rd +++ b/man/SummarizedExperiment-class.Rd @@ -572,7 +572,7 @@ exptData(x, ...) <- value \seealso{ \link{GRanges}, \link[IRanges]{DataFrame}, - \link[IRanges]{SimpleList}, + \link[S4Vectors]{SimpleList}, } \examples{