scCustomize 0.7.0 (2022-01-10)

Added

Added VlnPlot_scCustom function.
Added raster support to Stacked_VlnPlot
Added make_unique parameter to Extract_Top_Markers function.
Added Clustered_DotPlot function.
Added Drosophila Melanogaster as default species option in Add_Mito_Ribo_Seurat and Add_Mito_Ribo_LIGER.

Changed

Now requires Seurat v4.0.6 (instead of v4.0.5) to support ability to rasterize points in VlnPlot.
viridis color palette shortcuts now contain palettes with 30 colors (increased from 10).

Fixes

Fixed Read_Metrics_10X errors that occurred due to differing outputs depending on Cell Ranger version or type of assay.
Added direct importFrom for DefaultDimReduc from SeuratObject package to avoid potential errors.
Fixed typos/styling in function documentation.

scCustomize 0.6.3 (2021-12-16)

Fixes

Fixed Read_Metrics_10X errors that occured due to differing outputs depending on Cell Ranger version or type of assay.
Added direct importFrom for DefaultDimReduc from SeuratObject to avoid potential errors.

scCustomize 0.6.2 (2021-12-01)

Fixes

Fixed barcode name duplication checks in Merge_Sparse_Data_All. (#8)
Fixed package imports in DESCRIPTION to avoid installation errors.
Fixed NULL check in Read_Metrics_10X, Read10X_Multi_Directory, and Read10X_h5_Multi_Directory.

scCustomize 0.6.1 (2021-11-19)

Added

Added plot spacing control to StackedVlnPlot with parameters plot_spacing and spacing_unit. (#6)
Added scCustomize_Palette function select palette to use (simplify internal code).

Changes

Changed citation info to reflect global DOI and not version DOI.

Fixes

Restore package color palette defaults to Iterate_VlnPlot.
Fix Iterate_... function checks for file path parameter if file_path = NULL.

scCustomize 0.6.0 (2021-11-16)

Added

scCustomize is public!! Version 0.6.0 is released!

Changes

Many function names have changed since private release see reference page/manual for updated function names.