cfde-config.yml

---
name: "MetabolomicsWorkbench"
version: "2024-05-08"
provenance_id: "infores:metabolomics_workbench"
predicate_mapping:
  produces: "biolink:produces"
  causally_influences: "biolink:produces"
  correlated_with_condition: "biolink:correlated_with"
edge_file: "MW.edges.csv"
node_files:
  - node_file:
      name: "MW.Anatomy.nodes.csv"
      type: "Anatomy"
      primary_id_column: "UBERON"
      secondary_id_column: "CHV"
  - node_file:
      name: "MW.Disease or Phenotype.nodes.csv"
      type: "Disease or Phenotype"
      primary_id_column: "MONDO"
      secondary_id_column: "CHV"
  - node_file:
      name: "MW.Gene.nodes.csv"
      type: "Gene"
      primary_id_column: "HGNC"
      secondary_id_column: "OMIM"
  - node_file:
      name: "MW.Metabolite.nodes.csv"
      type: "Metabolite"
      primary_id_column: "PUBCHEM"
      secondary_id_column: "PUBMED"
---
name: "LINCS"
version: "2024-05-08"
provenance_id: "infores:lincs"
predicate_mapping:
  in_similarity_relationship_with: "biolink:chemically_similar_to"
  negatively_regulates: "RO:0002212"
  positively_regulates: "RO:0002213"
edge_file: "LINCS.edges.csv"
node_files:
  - node_file:
      name: "LINCS.Gene.nodes.csv"
      type: "Gene"
      primary_id_column: "HGNC"
      secondary_id_column: "OMIM"
  - node_file:
      name: "LINCS.Compound.nodes.csv"
      type: "Compound"
      primary_id_column: "PUBCHEM"