main.yml

name: Manual CPU PyTest in Conda

on:
  workflow_dispatch:
    inputs:
      python_version:
        description: 'Choose python version this action test with'
        required: true
        default: 'py38'
        type: choice
        options:
          - py38
          - py39
          - py310

jobs:
  build-linux-and-start-pytest:
    runs-on: cpu
    steps:
      - uses: actions/checkout@v3
      - name: Add conda to system path
        run: |
          # $CONDA_PREFIX is an environment variable pointing to the root of the miniconda directory
          echo $CONDA_PREFIX/bin >> $GITHUB_PATH
      - name: Install dependencies
        run: |
          conda env update --file tests/workflows_conf/environment_linux_${{ inputs.python_version }}.yml --name test_${{ inputs.python_version }} -q
      - name: Install Stereopy dependencies
        run: |
          conda init bash
          source ~/.bashrc
          conda activate test_${{ inputs.python_version }}

          pip install -r requirements.txt -q
          pip install -r tests/extra_requirements.txt -q
          pip install pathlib -q

          $CONDA_PREFIX/envs/test_${{ inputs.python_version }}/bin/python setup.py develop
      - name: Show Env Info
        run: |
          conda init bash
          source ~/.bashrc
          conda activate test_${{ inputs.python_version }}
          which python
          conda info
          env
          pip list
      - name: Test with pytest
        run: |
          $CONDA_PREFIX/envs/test_${{ inputs.python_version }}/bin/python -m pytest -m "not gpu and not heavy and not cell_cut_env" --durations=0