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---
layout: default
title: 'Schedule'
---
#### Click the heading of a topic to see the lecture slides or lab instructions. Slides are added as the course progresses.
**Monday 15th**
Room: Ingegerd Eriksson
**10.00-10.15** [Registration and Welcome, presentation of SciLifeLab](slides/scilife_intro_NGS_data_VT17_170515.pptx) (Elina Staaf, Magnus Alm Rosenblad)
**10.15-11.00** [Lecture: Introduction to Linux](slides/linux-tutorial.pdf) (Valentin Georgiev)
**11.00-12.00** [Exercise: Introduction to Linux](labs/linux-intro) (Valentin Georgiev, Martin Dahlö, Marcela Davila Lopez, Magnus Alm Rosenblad)
**12.00-13.00** Lunch
**13.00-14.00** [Lecture: Introduction to UPPMAX/UPPNEX](slides/2017_05_15_UPPMAX_tutorial.pdf) ( Valentin Georgiev)
**14.00-17.00** [Exercise: Introduction to UPPMAX/UPPNEX](labs/uppmax-intro) (Valentin Georgiev, Martin Dahlö, Marcela Davila Lopez, Magnus Alm Rosenblad)
**Tuesday 16th**
Room: Ingegerd Eriksson
**09.00-09.30** [Lecture: File types in bioinformatics](slides/file_types.pdf) (Martin Dahlö)
**09.30-12.00** [Exercise: File types in bioinformatics](labs/filetypes) (Valentin Georgiev, Marcela Davila Lopez, Martin Dahlö, Magnus Alm Rosenblad)
**12.00-13.00** Lunch
**13:00-14:00** [Lecture: Advanced Linux usage](slides/advanced_linux.pdf) (Martin Dahlö)
**14:00-17:00** [Exercise: Advanced Linux usage](labs/loops_lab) (Valentin Georgiev, Marcela Davila Lopez, Martin Dahlö, Magnus Alm Rosenblad)
**Wednesday 17th**
Room: Ingegerd Eriksson
**09:00-10.00** [Lecture: NGS workflow](slides/NGS_workflow.pdf) (Sebastian DiLorenzo)
**10:00-12.00** [Exercise: NGS workflow part I](labs/NGS_workflow) (Sebastian DiLorenzo, Katarina Truvé, Magnus Alm Rosenblad)
**12.00-13.00** Lunch
**13.00-17:00** [Exercise: NGS workflow part II](labs/NGS_workflow) (Sebastian DiLorenzo, Lena Hansson, Magnus Alm Rosenblad)
**18:00-** Course dinner at [Taverna Averna](https://www.tavernaaverna.se/)
**Thursday 18th**
Room: Birgit Thilander 9-12, thereafter Ingegerd Eriksson
**09.00-11.00** [Lecture: Next Generation Sequencing Overview](slides/Sequencing_OVP2017_b.pdf) (Olga Vinnere Pettersson)
**11:00-12.00** [Lecture: NGS and bioinformatics analysis pipelines](slides/SciLife_Bioinfo_course_may2017_AA.ppt) (Adam Ameur)
**12.00-13.00** Lunch
**13.00-14.00** [Lecture: RNA sequencing, transcriptome and expression quantification](slides/Lecture.html) (Lena Hansson)
**14.00-17.00** [Exercise: RNA sequencing, transcriptome and expression quantification part I](labs/RNAseqLab.md) (Leif Väremo, Lena Hansson, Sebastian DiLorenzo)
**Friday 19th**
Room: Ingegerd Eriksson
**09:00-10:00** [Lecture: Data management](slides/2017-05-18%20Data%20management%20for%20NGS%20course.pdf) (Niclas Jareborg)
**10:30-12:00** [Exercise: RNA sequencing, transcriptome and expression quantification part II](labs/RNAseqLab.md) (Leif Väremo, Lena Hansson, Sebastian DiLorenzo, Niclas Jareborg)
**12.00-13.00** Lunch
**13.00-13.20** [Lecture: The Bioinformatics Infrastructure in Sweden](slides/NBIS%20NGScourse%202017-05.pdf) (Niclas Jareborg)
**13:20-15.00** Open discussions (Leif Väremo, Sebastian DiLorenzo, Katarina Truvè)