DESCRIPTION

Package: regentrans
Title: A framework and R package for using genomics to study regional pathogen transmission
Version: 1.0.0
Authors@R: c( 
    person(given = "Sophie",
           family = "Hoffman",
           role = c("aut", "cre"),
           email = "shoffm@umich.edu",
           comment = c(ORCID = "0000-0003-2518-6422")),
    person(given = "Zena",
           family = "Lapp",
           role = c("aut"),
           email = "zenalapp@umich.edu",
           comment = c(ORCID = "0000-0003-4674-2176")),
    person(given = "Joyce",
           family = "Wang",
           role = c("aut"),
           email = "wangjoy@umich.edu",
           comment = c(ORCID = "0000-0002-8674-1015")),
    person(given = "Evan",
           family = "Snitkin",
           role = c("aut"),
           email = "esnitkin@umich.edu",
           comment = c(ORCID = "0000-0001-8409-278X")))
URL: https://snitkin-lab-umich.github.io/regentrans/index.html 
BugReports: https://github.com/Snitkin-Lab-Umich/regentrans/issues
Description: Tools and framework for studying regional pathogen transmission using genomic data.
    See the GitHub page <https://github.com/Snitkin-Lab-Umich/regentrans> 
    for more information, documentation, and examples.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports:
    dplyr,
    ape,
    phytools, 
    tidyr, 
    igraph,
    stats,
    future.apply,
    purrr,
    tibble,
    rlang 
Suggests:
    testthat,
    devtools,
    knitr,
    ggplot2,
    ggtree,
    pheatmap,
    gridExtra,
    cowplot,
    scales,
    readr,
    rmarkdown,
    doFuture,
    tidyverse
VignetteBuilder: knitr
Depends: 
    R (>= 2.10)