Fix-amino acid pathways localization

[feiranl]

Description of the issue:

• Some reactions in amino acid pathways do not reflect the correct compartments

I hereby confirm that I have:

• Tested my code with all requirements for running the model
• Done this analysis in the main branch of the repository
• Checked that a similar issue does not exist already
• If needed, asked first in the Gitter chat room about the issue

[hongzhonglu]

For this issue, I suggest the protein compartment annotation from SGD (https://www.yeastgenome.org/) is used. In general, the protein compartment in the yeast-GEM should be curated in detail besides amino acid pathways localisation. It will be nice to use the same standard in the protein compartment annotation.