Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat: KEGG pathway annotation #317

Open
3 of 4 tasks
edkerk opened this issue Jun 5, 2022 · 0 comments
Open
3 of 4 tasks

feat: KEGG pathway annotation #317

edkerk opened this issue Jun 5, 2022 · 0 comments

Comments

@edkerk
Copy link
Member

edkerk commented Jun 5, 2022

Description of the issue:

With single subSystem assignments (#11), that do no necessarily match KEGG pathways (#307), and multiple KEGG pathways that can match one reaction, there should be dedicated KEGG pathway annotations. These can be stored in the rxnMiriams field (use RAVEN's editMiriam function), as KEGG pathways is on identifiers.org.

Note that some annotation is already available here, but the information in that file is incomplete: this information should be freshly taken from KEGG. If this would yield additional kegg.reaction annotations, then these should of course also be added to the model.

I hereby confirm that I have:

  • Tested my code with all requirements for running the model
  • Done this analysis in the main branch of the repository
  • Checked that a similar issue does not exist already
  • If needed, asked first in the Gitter chat room about the issue
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant