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Updated Home (markdown)
Change name to home for features
Change home page name
List MPI dependency
Specify reproducibility step
Outline scope of result reproducibility
Link to reproducing published results
Clean code blocks
Fix detail references for reproducing results
Links to publications
Add details for optional packages
Create reproducibility page
Add supported systems details
Link to publications
Restructure visualization description
Remove unneeded colons
Change name to home
Remove unused title
Links to running, visualization, and additional details
Create additional details page
Edit order of paragraphs for correctness
Create visualization page
Updated Running ANACIN X (markdown)
Fix internal page links
Create running page
Updated Software Overview (markdown)