select_directory.xml

<tool id="select_directory" name="Select Test Directory" version="0.0.1">
    <description>CBA Y-MAZE SPONTANEOUS ALTERATION EXPERIMENT</description>
    <command interpreter="Rscript">
    Y_MAZE_DATA_PROCESSING_MACROv4.R $test_dir $out_file1 > $out_file2
    </command>


<code file="cba_tool_form.py" />
 <inputs>
    <param format="text" name="test_dir" label="Ymaze Test Directory" type="select" dynamic_options="get_dir_options('/shares/MNBF/Testing Data/TEMP for Spont Alt Tracks')" />
</inputs>
<outputs>
    <data name="out_file1" format="xlsx" metadata_source="input1"/>
    <data name="out_file2" format="txt"/>
</outputs>

<help>


**What it does:**
Y MAZE DATA PROCESSING MACRO v3

</help>
</tool>