update_setup

#!/bin/bash

# update_setup version 1.0
# This script will update all necessary files for personal projects from ThomasYeoLab/project_setup
# This script is automatically updated and called in pre-push hook
# For manual updates with out push, simply use:
#   wget -q https://raw.githubusercontent.com/ThomasYeoLab/project_setup/main/update_setup -O update_setup.new
# And manually replace this file

repo_dir=$(git rev-parse --show-toplevel)

# Update scripts in update list
script_list=(workflows/pull_request_checks.yml workflows/pr_checks.sh hooks/pre-commit)
for script in $script_list; do
    script_dir=$(dirname "$script")
    if [ ! -d "${repo_dir}/setup/${script_dir}" ]; then
        mkdir -p ${repo_dir}/setup/${script_dir}
    fi
    if [ ! -e "${repo_dir}/setup/${script}" ]; then
        wget -q https://raw.githubusercontent.com/ThomasYeoLab/project_setup/main/${script} -O ${repo_dir}/setup/${script}
        git add ${repo_dir}/setup/${script}
        git commit -m "Automatic commit: Add setup/${script}" --no-verify
        echo "setup/${script} is added."
    else
        wget -q https://raw.githubusercontent.com/ThomasYeoLab/project_setup/main/${script} -O ${repo_dir}/setup/${script}.new
        if diff ${repo_dir}/setup/${script} ${repo_dir}/setup/${script}.new >/dev/null; then
            rm ${repo_dir}/setup/${script}.new
        else
            rm ${repo_dir}/setup/${script}
            mv ${repo_dir}/setup/${script}.new ${repo_dir}/setup/${script}
            git add ${repo_dir}/setup/${script}
            git commit -m "Automatic commit: Update setup/${script}" --no-verify
            echo "setup/${script} is updated."
        fi
    fi
done

# Copy workflows files (symbolic link does not work for workflows)
if [ ! -d "${repo_dir}/.github/workflows" ]; then
    mkdir -p ${repo_dir}/.github/workflows
fi

if [ -e "${repo_dir}/.github/workflows/pull_request_checks.yml" ]; then
    rm ${repo_dir}/.github/workflows/pull_request_checks.yml
    cp ${repo_dir}/setup/workflows/pull_request_checks.yml ${repo_dir}/.github/workflows/pull_request_checks.yml
    git add ${repo_dir}/.github/workflows/pull_request_checks.yml
    git commit -m "Automatic commit: Update .github/workflows/pull_request_checks.yml" --no-verify
else
    cp ${repo_dir}/setup/workflows/pull_request_checks.yml ${repo_dir}/.github/workflows/pull_request_checks.yml
    git add ${repo_dir}/.github/workflows/pull_request_checks.yml
    git commit -m "Automatic commit: Add .github/workflows/pull_request_checks.yml" --no-verify
fi