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docker-compose.yml
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version: '2'
volumes:
training-volume:
ssh-keygen-volume:
jenkins-home-volume:
services:
# traefik reverse proxy to expose the jupyter and jenkins servers over ssl via a common hostname
traefik:
image: traefik:latest
mem_limit: 512m
command: --debug=True --docker --docker.watch --web --web.address=:28443 --entryPoints='Name:http Address::80 --entryPoints='Name:https Address::443 --defaultEntryPoints='http,https'
ports:
- '443:443'
- '80:80'
- '28443:28443'
volumes:
- /var/run/docker.sock:/var/run/docker.sock
# This is a single shot container that creates a set of ssh keys per instance
# and deploys them to a persistent volume shared between the sandbox and
# jupyter container. By doing this, we don't need to ship keys with the image
# or source.
ssh-keygen:
image: agaveplatform/jupyter-notebook:5.2
entrypoint: /bin/bash
command: /usr/local/bin/keygen.sh
user: jovyan
env_file:
- training.env
volumes:
- ssh-keygen-volume:/home/jovyan/.ssh
- ./docker/ssh-keygen/keygen.sh:/usr/local/bin/keygen.sh
# Jupyter server customized for the tenant and user specified by the AGAVE_USERNAME,
# AGAVE_PASSWORD, and AGAVE_TENANT environment variables defined in the compose command
jupyter:
image: agaveplatform/jupyter-notebook:5.2
command: start-notebook.sh --NotebookApp.token=''
mem_limit: 2048m
restart: on-failure
ports:
- '8888:8888'
depends_on:
- ssh-keygen
env_file:
- training.env
environment:
- GRANT_SUDO=yes
- VM_MACHINE=training-node-${AGAVE_USERNAME}
- VM_HOSTNAME=localhost
- USE_TUNNEL=True
- ENVIRONMENT=training
- SCRATCH_DIR=/home/jovyan
- MACHINE_USERNAME=jovyan
- MACHINE_NAME=sandbox
- DOCKERHUB_NAME=stevenrbrandt
- AGAVE_APP_DEPLOYMENT_PATH=agave-deployment
- AGAVE_CACHE_DIR=/home/jovyan/work/.${AGAVE_TENANT}
- AGAVE_JSON_PARSER=jq
- AGAVE_SYSTEM_SITE_DOMAIN=localhost
- AGAVE_STORAGE_WORK_DIR=/home/jovyan
- AGAVE_STORAGE_HOME_DIR=/home/jovyan
- AGAVE_APP_NAME=funwave-tvd-hawaii-${AGAVE_USERNAME}
- AGAVE_STORAGE_SYSTEM_ID=${AGAVE_TENANT}-storage-${AGAVE_USERNAME}
- AGAVE_EXECUTION_SYSTEM_ID=${AGAVE_TENANT}-exec-${AGAVE_USERNAME}
volumes:
- ssh-keygen-volume:/home/jovyan/.ssh:ro
- training-volume:/home/jovyan/work
- .:/home/jovyan/notebooks
labels:
- "traefik.port=8888"
- "traefik.protocol=http"
- "traefik.tags=${AGAVE_USERNAME},jupyter"
- "traefik.backend=${AGAVE_USERNAME}-training"
- "traefik.frontend.rule=PathPrefix:/"
# sandbox ubuntu server with build tools, OpenMP, and the sample code
sandbox:
image: agaveplatform/training-sandbox:latest
mem_limit: 2048m
privileged: True
restart: on-failure
ports:
- '10022:22'
depends_on:
- ssh-keygen
env_file:
- training.env
environment:
- VM_MACHINE=training-node-${AGAVE_USERNAME}
volumes:
- ssh-keygen-volume:/home/jovyan/.ssh:ro
- training-volume:/home/jovyan/work
- /var/run/docker.sock:/var/run/docker.sock
labels:
- traefik.enable=false
# Jenkins CI server for automated builds.
jenkins:
image: agaveplatform/jenkins:sc18
mem_limit: 2048m
privileged: True
restart: on-failure
ports:
- '8080:8080'
- '8443:8443'
depends_on:
- ssh-keygen
env_file:
- training.env
environment:
- AGAVE_CACHE_DIR=/var/jenkins_home/.${AGAVE_TENANT}
volumes:
- ssh-keygen-volume:/var/jenkins_home/.ssh:ro
labels:
- "traefik.port=8080"
- "traefik.protocol=http"
- "traefik.tags=jenkins"
- "traefik.backend=jenkins"
- "traefik.frontend.rule=PathPrefix:/jenkins"
- "traefik.frontend.passHostHeader=true"