test_fredi.yml

### https://github.com/actions/upload-artifact
### https://github.blog/changelog/2021-11-10-github-actions-input-types-for-manual-workflows/
### https://docs.github.com/en/actions/using-workflows/caching-dependencies-to-speed-up-workflows
### https://github.com/r-lib/actions/tree/v2/setup-r-dependencies
### https://docs.github.com/en/actions/using-jobs/using-conditions-to-control-job-execution
### For uploading artifacts:
###     "path:" is the output path where Pandoc will write the compiled PDF.
###      Note, this should be the same directory as the input paper.md
name: 3. Test FrEDI Package

on:
  workflow_dispatch:
    inputs:
      ref_branch:
        type: string
        description: To which branch of FrEDI do you want to compare results)?
      agg_types:
        type: choice
        description: Aggregate across impact types?
        required: true
        options:
        - no
        - yes
      # figH_results:
      #   type: choice
      #   description: Fig H results?
      #   required: true
      #   options:
      #   - no
      #   - yes
      # make_appx_figs:
      #   type: choice
      #   description: Create appendix figures for report?
      #   required: true
      #   options:
      #   - no
      #   - yes
      # make_tots_figs:
      #   type: choice
      #   description: Make figures for impact type totals?
      #   required: true
      #   options:
      #   - no
      #   - yes

jobs:
  compile_data:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    # echo "${{ inputs.run_tests }} ${{ inputs.figH_results }} ${{ inputs.make_appx_figs }} ${{ inputs.make_tots_figs }}"
    name: Load Package Code
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Send input status
        run: |
          echo "${{ inputs.ref_branch }} ${{ inputs.agg_types }}"


      - name: Setup R
        uses: r-lib/actions/setup-r@v2

      - name: Setup R package dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          cache: true
          cache-version: 1
          packages: |
            any::tidyverse
            any::ggpubr
            any::openxlsx
            any::devtools

      ### Install FrEDI from new branch and get results
      ### Install FrEDI from ref branch and get results
      - name: Test results
        run: |
          Rscript -e '
            ###### Paths ######
            ### Main repo path, FrEDI project path, scripts path
            rPath0   <- ".";
            # pPath0   <- rPath0 |> file.path("FrEDI")
            pPath0   <- rPath0
            sPath0   <- pPath0 |> file.path("scripts")
            tPath0   <- pPath0 |> file.path("testing")

            ### Where to save results
            oPath0   <- pPath0 |> file.path("data_tests")
            oFileNew <- oPath0 |> file.path("newResults.rda")
            oFileRef <- oPath0 |> file.path("refResults.rda")

            ### Check if path exists and, if not, create it
            if(!exists0) oPath0 |> dir.create(recursive = TRUE)

            ###### Action Arguments ######
            urlRepo   <- "https://github.com/USEPA/FrEDI"
            newBranch <- "${{ github.ref_name   }}"
            refBranch <- "${{ inputs.ref_branch }}"
            aggTypes  <- "${{ inputs.agg_types  }}" == "true"
            if(aggTypes) cAggLvls  <- "all"
            else         cAggLvls  <- c("national", "modelaverage", "impactyear")

            ###### Run FrEDI for Reference Branch ######
            ### Install FrEDI from ref branch
            ### Load library
            ### Run FrEDI
            devtools::install_github(repo=urlRepo, ref=refBranch, dependencies=F, upgrade="never", force=T, type="source")
            library(FrEDI)
            dfRef    <- run_fredi(allLevels=cAggLvls)
            dfRef |> save(file=oFileRef)

            ### Detach FrEDI package
            package:FrEDI |> detach(unload=TRUE)

            ###### Run FrEDI for New Branch ######
            ### Install FrEDI from new branch
            devtools::install_github(repo=urlRepo, ref=newBranch, dependencies=F, upgrade="never", force=T, type="source")
            library(FrEDI)
            dfNew    <- run_fredi(allLevels=cAggLvls)
            dfNew |> save(file=oFileNew)

            ###### Test results ######
            ### Load testing scripts
            tFiles0 <- tPath0 |> list.files(full.names=TRUE)
            for(file_i in tFiles0){file_i |> source(); rm(file_i)}
            ### Get test results
            dfTests <- general_fredi_test(newOutputs=dfNew, refOutputs=dfRef, outPath=oPath0)
            '

      - name: Upload Tests
        uses: actions/upload-artifact@v4
        with:
          name: Test Data
          path: |
            data_tests/*.rd*
            data_tests/*.xlsx