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Exclude reviews from VFP #3

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valearna opened this issue Dec 1, 2020 · 2 comments
Open

Exclude reviews from VFP #3

valearna opened this issue Dec 1, 2020 · 2 comments
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enhancement New feature or request

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@valearna
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valearna commented Dec 1, 2020 •
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  • Read paper type from postgres (through wbtools) and exclude reviews
  • Are there other types of papers to exclude (e.g., MicroPublications, book chapters) @Paul-Davis @MagdalenaZZ?
@valearna valearna added the enhancement New feature or request label Dec 2, 2020
@Paul-Davis
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It might be worth treating book chapters like review papers, but I would think keep microPubs?

@valearna
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valearna commented Dec 3, 2020

I talked to @kyook and @draciti and they would like to exclude micropublications from the main VFP pipeline, but possibly process them in a separate pipeline to verify that all the new variants in the uPubs are already in WormBase.
This is the complete list of paper types that we have in our postgres DB. Can you check those that need to be included in the pipeline @Paul-Davis?

  • Journal_article
  • Review
  • Meeting_abstract
  • Gazette_article
  • Book_chapter
  • News
  • Email
  • Book
  • Historical_article
  • Comment
  • Letter
  • Monograph
  • Editorial
  • Published_erratum
  • Retracted_publication
  • Technical_report
  • Other
  • WormBook
  • Interview
  • Lectures
  • Congresses
  • Interactive_tutorial
  • Biography
  • Directory
  • Method
  • Retraction_of_publication
  • Micropublication

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@Paul-Davis @valearna