Bug report [BUG] about tutorial

[Keep-Raining]

Describe the bug
/src/pycisTopic/gene_annotation.py, line 668
/src/pycisTopic/cli/subcommand/qc.py, line 212, 219: there is no parameter 'has_header', I think it should be 'include_header'.

and /src/pycisTopic/cli/subcommand/qc.py, line 498, the CB column is mistakenly named as 'by'.

To Reproduce
Follow the tutorial
https://pycistopic.readthedocs.io/en/latest/notebooks/human_cerebellum.html#QC: Cell17 and Cell24

https://pycistopic.readthedocs.io/en/latest/notebooks/human_cerebellum.html#QC: Cell24

[ghuls]

The Polars_1xx branch should have this fixes (and a lot of other Polars syntax updates: https://github.com/aertslab/pycisTopic/tree/polars_1xx

9892252
ca9b230

Tutorials still need to be updated.