library-config.json

{
    "libraries": {
        "C": {
            "genome": [
                "hg19"
            ],
            "readgroups": {
                "C_L002": {
                    "1": "/lab/work/porchard/nextflow/data/fastq-new/C_S2_L002_R1_001.fastq.gz",
                    "2": "/lab/work/porchard/nextflow/data/fastq-new/C_S2_L002_R3_001.fastq.gz",
                    "index": "/lab/work/porchard/nextflow/data/fastq-new/C_S2_L002_R2_001.fastq.gz"
                }
            }
        },
        "N": {
            "genome": [
                "hg19",
                "rn6"
            ],
            "readgroups": {
                "N_L001": {
                    "1": "/lab/work/porchard/nextflow/data/fastq-new/N_S1_L001_R1_001.fastq.gz",
                    "2": "/lab/work/porchard/nextflow/data/fastq-new/N_S1_L001_R3_001.fastq.gz",
                    "index": "/lab/work/porchard/nextflow/data/fastq-new/N_S1_L001_R2_001.fastq.gz"
                },
                "N_L002": {
                    "1": "/lab/work/porchard/nextflow/data/fastq-new/N_S1_L002_R1_001.fastq.gz",
                    "2": "/lab/work/porchard/nextflow/data/fastq-new/N_S1_L002_R3_001.fastq.gz",
                    "index": "/lab/work/porchard/nextflow/data/fastq-new/N_S1_L002_R2_001.fastq.gz"
                }
            }
        }
    }
}