_pkgdown.yml

title: mice
url: https://amices.org/mice/
template:
  bootstrap: 5
  params:
    bootswatch: lumen
reference:
- title: Missing data exploration
  desc: |
    Functions to count and explore the structure of the missing data.
  contents:
  - md.pattern
  - md.pairs
  - cc
  - cci
  - ic
  - ici
  - mcar
  - ncc
  - nic
  - nimp
  - fico
  - flux
  - fluxplot
- title: Main imputation functions
  desc: |
    The workflow of multiple imputation is: multiply-impute the data, apply the complete-data model to each imputed data set, and pool the results to get to the final inference. The main functions for imputing the data are:
  contents:
  - mice
  - mice.mids
  - parlmice
  - futuremice
- title: Elementary imputation functions
  desc: |
    The elementary imputation function is the workhorse that creates the actual imputations. Elementary functions are called through the `method` argument of `mice` function. Each function imputes one or more columns in the data. There are also `mice.impute.xxx` functions outside the `mice` package.
  contents: starts_with("mice.impute")
- title: Imputation model helpers
  desc: |
    Specification of the imputation models can be made more convenient using the following set of helpers.
  contents:
  - quickpred
  - squeeze
  - make.blocks
  - make.blots
  - make.formulas
  - make.method
  - make.post
  - make.predictorMatrix
  - make.visitSequence
  - make.where
  - construct.blocks
  - name.blocks
  - name.formulas
- title: Plots comparing observed to imputed/amputed data
  desc: |
    These plots contrast the observed data with the imputed/amputed data, usually with a blue/red distinction.
  contents:
  - bwplot.mids
  - densityplot.mids
  - plot.mids
  - stripplot.mids
  - xyplot.mids
- title: Repeated analyses and combining analytic estimates
  desc: |
    Multiple imputation creates m > 1 completed data sets, fits the model of interest to each of these, and combines the analytic estimates. The following functions assist in executing the analysis and pooling steps:
  contents:
  - with.mids
  - pool
  - pool.r.squared
  - pool.scalar
  - pool.table
  - nelsonaalen
  - pool.compare
  - anova.mira
  - fix.coef
  - D1
  - D2
  - D3
- title: Data manipulation
  desc: |
    The multiply-imputed data can be combined in various ways, and exported into other formats.
  contents:
  - complete
  - cbind
  - rbind
  - ibind
  - as.mids
  - as.mira
  - as.mitml.result
  - filter.mids
  - mids2mplus
  - mids2spss
- title: Class descriptions
  desc: |
    The data created at the various analytic phases are stored as list objects of a specific class. The most important classes and class-test functions are:
  contents:
  - mids
  - mira
  - mipo
  - is.mids
  - is.mipo
  - is.mira
  - is.mitml.result
- title: Extraction functions
  desc: |
    Helpers to extract and print information from objects of specific classes.
  contents:
  - convergence
  - getfit
  - getqbar
  - glance.mipo
  - print.mids
  - print.mira
  - print.mice.anova
  - print.mice.anova.summary
  - summary.mira
  - summary.mids
  - summary.mice.anova
  - tidy.mipo
- title: Low-level imputation functions
  desc: |
    Several functions are dedicated to common low-level operations to generate the imputations:
  contents:
  - estimice
  - norm.draw
  - .norm.draw
  - .pmm.match
- title: Multivariate amputation
  desc: |
    Amputation is the inverse of imputation, starting with a complete dataset, and creating missing data pattern according to the posited missing data mechanism. Amputation is useful for simulation studies.
  contents:
  - ampute
  - bwplot.mads
  - xyplot.mads
  - is.mads
  - mads
  - print.mads
  - summary.mads
- title: Datasets
  desc: Built-in datasets
  contents:
  - boys
  - brandsma
  - employee
  - fdd
  - fdgs
  - leiden85
  - mammalsleep
  - mnar_demo_data
  - nhanes
  - nhanes2
  - pattern
  - popmis
  - pops
  - potthoffroy
  - selfreport
  - tbc
  - toenail
  - toenail2
  - walking
  - windspeed
- title: Miscellaneous functions
  desc: Miscellaneous functions
  contents:
  - appendbreak
  - extractBS
  - glm.mids
  - lm.mids
  - matchindex
  - mdc
  - mice.theme
  - supports.transparent
  - version
articles:
- title: General
  navbar: ~
  contents:
  - overview
  - oldfriends