PhenoMapping: A workflow to decompose the information in genome-scale models into modules that allow the study of cellular mechanisms underlying phenotypes
This code is the release for the study of context-specific information applied to analyse high-throughput gene knockout data in the blood and liver stage development of the malaria parasite P. berghei
You will need matTFA to run it and TEX-FBA to perform the transcriptomics related analyses. We recommend using commercial solvers such as CPLEX to run these problems.