diff --git a/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/AbstractCompactionTask.java b/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/AbstractCompactionTask.java
index 6842a50145ef..f58f2d0ef3e4 100644
--- a/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/AbstractCompactionTask.java
+++ b/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/AbstractCompactionTask.java
@@ -457,32 +457,7 @@ protected void validateCompactionResult(
 
     TsFileValidator validator = TsFileValidator.getInstance();
     if (needToValidatePartitionSeqSpaceOverlap) {
-      List<TsFileResource> timePartitionSeqFiles =
-          new ArrayList<>(tsFileManager.getOrCreateSequenceListByTimePartition(timePartition));
-      timePartitionSeqFiles.removeAll(sourceSeqFiles);
-      timePartitionSeqFiles.addAll(validTargetFiles);
-      timePartitionSeqFiles.sort(
-          (f1, f2) -> {
-            int timeDiff =
-                Long.compareUnsigned(
-                    Long.parseLong(f1.getTsFile().getName().split("-")[0]),
-                    Long.parseLong(f2.getTsFile().getName().split("-")[0]));
-            return timeDiff == 0
-                ? Long.compareUnsigned(
-                    Long.parseLong(f1.getTsFile().getName().split("-")[1]),
-                    Long.parseLong(f2.getTsFile().getName().split("-")[1]))
-                : timeDiff;
-          });
-      List<TsFileResource> overlapFilesInTimePartition =
-          RepairDataFileScanUtil.checkTimePartitionHasOverlap(timePartitionSeqFiles, true);
-      if (!overlapFilesInTimePartition.isEmpty()) {
-        LOGGER.error(
-            "Failed to pass compaction validation, source seq files: {}, source unseq files: {}, target files: {}",
-            sourceSeqFiles,
-            sourceUnseqFiles,
-            targetFiles);
-        throw new CompactionValidationFailedException(overlapFilesInTimePartition);
-      }
+      checkSequenceSpaceOverlap(sourceSeqFiles, sourceUnseqFiles, targetFiles, validTargetFiles);
     }
     if (needToValidateTsFileCorrectness && !validator.validateTsFiles(validTargetFiles)) {
       LOGGER.error(
@@ -495,6 +470,87 @@ protected void validateCompactionResult(
     }
   }
 
+  protected void checkSequenceSpaceOverlap(
+      List<TsFileResource> sourceSeqFiles,
+      List<TsFileResource> sourceUnseqFiles,
+      List<TsFileResource> targetFiles,
+      List<TsFileResource> validTargetFiles) {
+    List<TsFileResource> timePartitionSeqFiles =
+        new ArrayList<>(tsFileManager.getOrCreateSequenceListByTimePartition(timePartition));
+    timePartitionSeqFiles.removeAll(sourceSeqFiles);
+    timePartitionSeqFiles.addAll(validTargetFiles);
+    timePartitionSeqFiles.sort(
+        (f1, f2) -> {
+          int timeDiff =
+              Long.compareUnsigned(
+                  Long.parseLong(f1.getTsFile().getName().split("-")[0]),
+                  Long.parseLong(f2.getTsFile().getName().split("-")[0]));
+          return timeDiff == 0
+              ? Long.compareUnsigned(
+                  Long.parseLong(f1.getTsFile().getName().split("-")[1]),
+                  Long.parseLong(f2.getTsFile().getName().split("-")[1]))
+              : timeDiff;
+        });
+    if (this instanceof InnerSpaceCompactionTask
+        || this instanceof InsertionCrossSpaceCompactionTask) {
+      timePartitionSeqFiles =
+          filterResourcesByFileTimeIndexInOverlapValidation(
+              timePartitionSeqFiles, validTargetFiles);
+    }
+    List<TsFileResource> overlapFilesInTimePartition =
+        RepairDataFileScanUtil.checkTimePartitionHasOverlap(timePartitionSeqFiles, true);
+    if (!overlapFilesInTimePartition.isEmpty()) {
+      LOGGER.error(
+          "Failed to pass compaction overlap validation, source seq files: {}, source unseq files: {}, target files: {}",
+          sourceSeqFiles,
+          sourceUnseqFiles,
+          targetFiles);
+      for (TsFileResource resource : overlapFilesInTimePartition) {
+        if (resource.getTsFileRepairStatus() != TsFileRepairStatus.CAN_NOT_REPAIR) {
+          resource.setTsFileRepairStatus(TsFileRepairStatus.NEED_TO_CHECK);
+        }
+      }
+    }
+  }
+
+  private List<TsFileResource> filterResourcesByFileTimeIndexInOverlapValidation(
+      List<TsFileResource> timePartitionSeqFiles, List<TsFileResource> targetFiles) {
+    if (targetFiles.isEmpty()) {
+      return timePartitionSeqFiles;
+    }
+    TsFileResource firstTargetResource = targetFiles.get(0);
+    TsFileResource lastTargetResource = targetFiles.get(targetFiles.size() - 1);
+    long minStartTimeInTargetFiles =
+        targetFiles.stream().mapToLong(TsFileResource::getFileStartTime).min().getAsLong();
+    long maxEndTimeInTargetFiles =
+        targetFiles.stream().mapToLong(TsFileResource::getFileEndTime).max().getAsLong();
+    List<TsFileResource> result = new ArrayList<>(timePartitionSeqFiles.size());
+    int idx;
+    for (idx = 0; idx < timePartitionSeqFiles.size(); idx++) {
+      TsFileResource resource = timePartitionSeqFiles.get(idx);
+      if (resource == firstTargetResource) {
+        break;
+      }
+      if (resource.getFileEndTime() >= minStartTimeInTargetFiles) {
+        result.add(resource);
+      }
+    }
+    for (; idx < timePartitionSeqFiles.size(); idx++) {
+      TsFileResource resource = timePartitionSeqFiles.get(idx);
+      result.add(resource);
+      if (resource == lastTargetResource) {
+        break;
+      }
+    }
+    for (idx += 1; idx < timePartitionSeqFiles.size(); idx++) {
+      TsFileResource resource = timePartitionSeqFiles.get(idx);
+      if (resource.getFileStartTime() <= maxEndTimeInTargetFiles) {
+        result.add(resource);
+      }
+    }
+    return result;
+  }
+
   public abstract CompactionTaskType getCompactionTaskType();
 
   @TestOnly
diff --git a/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/InsertionCrossSpaceCompactionTask.java b/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/InsertionCrossSpaceCompactionTask.java
index fb93be97d030..8cd922a07c74 100644
--- a/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/InsertionCrossSpaceCompactionTask.java
+++ b/iotdb-core/datanode/src/main/java/org/apache/iotdb/db/storageengine/dataregion/compaction/execute/task/InsertionCrossSpaceCompactionTask.java
@@ -49,7 +49,7 @@
 public class InsertionCrossSpaceCompactionTask extends AbstractCompactionTask {
 
   private Phaser phaser;
-  private boolean failToPassOverlapValidation = false;
+  private boolean failToPassValidation = false;
 
   public InsertionCrossSpaceCompactionTask(
       Phaser phaser,
@@ -178,7 +178,7 @@ protected boolean doCompaction() {
           String.format("%.2f", costTime));
     } catch (Exception e) {
       if (e instanceof CompactionValidationFailedException) {
-        failToPassOverlapValidation = true;
+        failToPassValidation = true;
       }
       isSuccess = false;
       handleException(LOGGER, e);
@@ -295,7 +295,7 @@ private boolean shouldRollback() {
         || (unseqFileToInsert != null
             && unseqFileToInsert.modFileExists()
             && !targetFile.modFileExists())
-        || failToPassOverlapValidation;
+        || failToPassValidation;
   }
 
   private void rollback() throws IOException {
diff --git a/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/storageengine/dataregion/compaction/cross/InsertionCrossSpaceCompactionTest.java b/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/storageengine/dataregion/compaction/cross/InsertionCrossSpaceCompactionTest.java
index efab3d89d749..0193c616f1af 100644
--- a/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/storageengine/dataregion/compaction/cross/InsertionCrossSpaceCompactionTest.java
+++ b/iotdb-core/datanode/src/test/java/org/apache/iotdb/db/storageengine/dataregion/compaction/cross/InsertionCrossSpaceCompactionTest.java
@@ -51,6 +51,8 @@
 import org.junit.Test;
 
 import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Paths;
 import java.util.ArrayList;
 import java.util.List;
 import java.util.concurrent.Phaser;
@@ -499,10 +501,9 @@ public void testInsertionCompactionUpdateFileMetrics() throws IOException {
     Assert.assertEquals(
         unseqFileNumBeforeCompaction - 1, FileMetrics.getInstance().getFileCount(false));
 
-    // overlap
     TsFileResource unseqResource2 =
         generateSingleNonAlignedSeriesFileWithDevices(
-            "3-3-0-0.tsfile", new String[] {"d1"}, new TimeRange[] {new TimeRange(1, 4)}, false);
+            "3-3-0-0.tsfile", new String[] {"d1"}, new TimeRange[] {new TimeRange(5, 6)}, false);
     FileMetrics.getInstance()
         .addTsFile(
             unseqResource2.getDatabaseName(),
@@ -517,6 +518,9 @@ public void testInsertionCompactionUpdateFileMetrics() throws IOException {
     taskResource = new InsertionCrossCompactionTaskResource();
     taskResource.setToInsertUnSeqFile(unseqResource2);
     task = new InsertionCrossSpaceCompactionTask(null, 0, tsFileManager, taskResource, 0);
+    // .resource file not found
+    Files.deleteIfExists(
+        Paths.get(unseqResource2.getTsFilePath() + TsFileResource.RESOURCE_SUFFIX));
     // rollback
     Assert.assertFalse(task.start());
     Assert.assertEquals(seqFileNumBeforeCompaction, FileMetrics.getInstance().getFileCount(true));