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Questions about OASIS3 #1404

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fyb99 opened this issue Dec 10, 2024 · 2 comments
Open

Questions about OASIS3 #1404

fyb99 opened this issue Dec 10, 2024 · 2 comments

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@fyb99
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fyb99 commented Dec 10, 2024

Converters*
Which Clinica's converter is concerned?

  • oasis3-to-bids

hi, recently I am busy with converting the OASIS3 dataset. I have access the dataset. However, I am a little bit confused when reading the guideline.

''From the menu, load the table "ADRC Clinical Data" as well as "PETs" and "PUPs".

In the options, export a "Spreadsheet" of the five tables "Subjects, "MR Sessions", "ADRC Clinical Data", "PETs" and "PUPs".

Put the spreadsheets in a folder.''

Since I can not figure out where to load the table "ADRC Clinical Data", it seems ADRC is another clinical data cohort after searching it. How should I deal with it?

What I can find from the OASIS3 website is a dir called OASIS3_data_files? It contents looks like the attatched fig. But when input the path of this dir to the convert, it fails to do the converting and reports the error.
image

image

@AliceJoubert
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Hello !

Thanks for reporting back to us. Could you indicate which version of clinica you are using ? Did you try running the converter with the spreadsheet of the tables "Subjects, "MR Sessions", "PETs" and "PUPs" (what is indicated but without the ADRC) ?

Best,

@honndaj
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honndaj commented Dec 19, 2024

Converters* Which Clinica's converter is concerned?

  • oasis3-to-bids

hi, recently I am busy with converting the OASIS3 dataset. I have access the dataset. However, I am a little bit confused when reading the guideline.

''From the menu, load the table "ADRC Clinical Data" as well as "PETs" and "PUPs".

In the options, export a "Spreadsheet" of the five tables "Subjects, "MR Sessions", "ADRC Clinical Data", "PETs" and "PUPs".

Put the spreadsheets in a folder.''

Since I can not figure out where to load the table "ADRC Clinical Data", it seems ADRC is another clinical data cohort after searching it. How should I deal with it?

What I can find from the OASIS3 website is a dir called OASIS3_data_files? It contents looks like the attatched fig. But when input the path of this dir to the convert, it fails to do the converting and reports the error. image

image

I have the same problem. And Do you know where is the diagnosis?

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3 participants