failed to load tblout table

[Valentin-Bio]

Hello, I have previously used rhmmer to load hmmscan results using read_tblot() function. In my current case I want to load a hmmsearch table with nearly 26 thousand hits but I'm getting the following error:

Error in `$<-`:
! Assigned data `descriptions[!grepl(" *#", descriptions, perl = TRUE)]` must be compatible
  with existing data.
✖ Existing data has 25673 rows.
✖ Assigned data has 0 rows.
ℹ Only vectors of size 1 are recycled.
Caused by error in `vectbl_recycle_rhs_rows()`:
! Can't recycle input of size 0 to size 25673.

May this be due to the large amount of hits that report the table that I'm trying to load ?

bests,

Valentín.

[arendsee]

Thanks for the report Valentin! rhmmer doesn't support the output of search. It should though. If your data isn't private, could you send me the first 20 lines or so? Then I can use that as a test case and write a new parser function.

Alternatively, if you like writing R code yourself, I would be happy to accept a pull request.

[glitchheadgit]

The same problem. Can't parse both tblout and domtblout. Files attached below. Hope this will help!
phytases_tblout.txt
phytase_domtblout.txt

[arendsee]

@glitchheadgit I have added a partial fix, see the comment message above. Feel free to try this out and let me know if it solves the problem. If so, I will work on resubmitting to cran.