utils.py

import os
import os.path
import hashlib
import gzip
import errno
import tarfile
import zipfile
import skimage
import skimage.io
import skimage.transform
from PIL import Image
from matplotlib import cm
import cv2
from matplotlib.pyplot import imshow

import torch
from torch.utils.model_zoo import tqdm


def gen_bar_updater():
    pbar = tqdm(total=None)

    def bar_update(count, block_size, total_size):
        if pbar.total is None and total_size:
            pbar.total = total_size
        progress_bytes = count * block_size
        pbar.update(progress_bytes - pbar.n)

    return bar_update

def calculate_md5(fpath, chunk_size=1024 * 1024):
    md5 = hashlib.md5()
    with open(fpath, 'rb') as f:
        for chunk in iter(lambda: f.read(chunk_size), b''):
            md5.update(chunk)
    return md5.hexdigest()


def check_md5(fpath, md5, **kwargs):
    return md5 == calculate_md5(fpath, **kwargs)


def check_integrity(fpath, md5=None):
    if not os.path.isfile(fpath):
        return False
    if md5 is None:
        return True
    return check_md5(fpath, md5)

def download_url(url, root, filename=None, md5=None):
    """Download a file from a url and place it in root.
    Args:
        url (str): URL to download file from
        root (str): Directory to place downloaded file in
        filename (str, optional): Name to save the file under. If None, use the basename of the URL
        md5 (str, optional): MD5 checksum of the download. If None, do not check
    """
    import urllib

    root = os.path.expanduser(root)
    if not filename:
        filename = os.path.basename(url)
    fpath = os.path.join(root, filename)

    os.makedirs(root, exist_ok=True)

    # check if file is already present locally
    if check_integrity(fpath, md5):
        print('Using downloaded and verified file: ' + fpath)
    else:   # download the file
        try:
            print('Downloading ' + url + ' to ' + fpath)
            urllib.request.urlretrieve(
                url, fpath,
                reporthook=gen_bar_updater()
            )
        except (urllib.error.URLError, IOError) as e:
            if url[:5] == 'https':
                url = url.replace('https:', 'http:')
                print('Failed download. Trying https -> http instead.'
                      ' Downloading ' + url + ' to ' + fpath)
                urllib.request.urlretrieve(
                    url, fpath,
                    reporthook=gen_bar_updater()
                )
            else:
                raise e
        # check integrity of downloaded file
        if not check_integrity(fpath, md5):
            raise RuntimeError("File not found or corrupted.")


def download_and_extract_archive(url, download_root, extract_root=None, filename=None,
                                 md5=None, remove_finished=False):
    download_root = os.path.expanduser(download_root)
    if extract_root is None:
        extract_root = download_root
    if not filename:
        filename = os.path.basename(url)

    download_url(url, download_root, filename, md5)

    archive = os.path.join(download_root, filename)
    print("Extracting {} to {}".format(archive, extract_root))
    extract_archive(archive, extract_root, remove_finished)

def _save_response_content(response, destination, chunk_size=32768):
    with open(destination, "wb") as f:
        pbar = tqdm(total=None)
        progress = 0
        for chunk in response.iter_content(chunk_size):
            if chunk:  # filter out keep-alive new chunks
                f.write(chunk)
                progress += len(chunk)
                pbar.update(progress - pbar.n)
        pbar.close()


def _is_tarxz(filename):
    return filename.endswith(".tar.xz")


def _is_tar(filename):
    return filename.endswith(".tar")


def _is_targz(filename):
    return filename.endswith(".tar.gz")


def _is_tgz(filename):
    return filename.endswith(".tgz")


def _is_gzip(filename):
    return filename.endswith(".gz") and not filename.endswith(".tar.gz")


def _is_zip(filename):
    return filename.endswith(".zip")


def extract_archive(from_path, to_path=None, remove_finished=False):
    if to_path is None:
        to_path = os.path.dirname(from_path)

    if _is_tar(from_path):
        with tarfile.open(from_path, 'r') as tar:
            tar.extractall(path=to_path)
    elif _is_targz(from_path) or _is_tgz(from_path):
        with tarfile.open(from_path, 'r:gz') as tar:
            tar.extractall(path=to_path)
    elif _is_tarxz(from_path):
        with tarfile.open(from_path, 'r:xz') as tar:
            tar.extractall(path=to_path)
    elif _is_gzip(from_path):
        to_path = os.path.join(to_path, os.path.splitext(os.path.basename(from_path))[0])
        with open(to_path, "wb") as out_f, gzip.GzipFile(from_path) as zip_f:
            out_f.write(zip_f.read())
    elif _is_zip(from_path):
        with zipfile.ZipFile(from_path, 'r') as z:
            z.extractall(to_path)
    else:
        raise ValueError("Extraction of {} not supported".format(from_path))

    if remove_finished:
        os.remove(from_path)