Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Installation Error #959

Open
ukesh-sys opened this issue Jun 4, 2023 · 0 comments
Open

Installation Error #959

ukesh-sys opened this issue Jun 4, 2023 · 0 comments

Comments

@ukesh-sys
Copy link

I followed installation instructions @ https://gemini.readthedocs.io/en/latest/content/installation.html#automated-installation
tried multiple solutions but any of them didn't work.

Checking required dependencies...
wget found
Installing isolated base python installation
Installing base gemini package...
/usr/local/share/gemini/anaconda/bin/conda install --yes -c conda-forge -c bioconda gemini
Collecting package metadata (current_repodata.json): done
Solving environment: -
The environment is inconsistent, please check the package plan carefully
The following packages are causing the inconsistency:

  • conda-forge/noarch::flask==2.3.2=pyhd8ed1ab_0
  • conda-forge/noarch::huggingface_hub==0.15.1=pyhd8ed1ab_0
  • conda-forge/noarch::ipython==8.14.0=pyh41d4057_0
  • defaults/linux-64::conda-build==3.24.0=py310h06a4308_0
  • conda-forge/noarch::requests-toolbelt==1.0.0=pyhd8ed1ab_0
  • defaults/linux-64::transformers==4.24.0=py310h06a4308_0
  • conda-forge/noarch::ipykernel==6.23.1=pyh210e3f2_0
  • conda-forge/noarch::panel==0.14.0=pyhd8ed1ab_0
  • defaults/noarch::conda-token==0.4.0=pyhd3eb1b0_0
  • conda-forge/linux-64::matplotlib==3.7.1=py310hff52083_0
  • defaults/linux-64::anaconda-navigator==2.4.1=py310h06a4308_0
  • conda-forge/noarch::urllib3==2.0.2=pyhd8ed1ab_0
  • defaults/linux-64::anaconda==custom=py310_1
  • defaults/linux-64::scipy==1.10.1=py310hd5efca6_0
  • conda-forge/noarch::imbalanced-learn==0.10.1=pyhd8ed1ab_0
  • defaults/linux-64::qt-webengine==5.15.9=hd2b0992_4
  • conda-forge/noarch::cookiecutter==2.1.1=pyh6c4a22f_0
  • conda-forge/linux-64::scikit-image==0.20.0=py310h9b08913_1
  • conda-forge/noarch::intake==0.7.0=pyhd8ed1ab_0
  • conda-forge/noarch::hvplot==0.8.3=pyhd8ed1ab_0
  • defaults/linux-64::qt-main==5.15.2=h327a75a_7
  • conda-forge/noarch::nbclassic==1.0.0=pyhb4ecaf3_1
  • defaults/linux-64::dask-core==2023.4.1=py310h06a4308_0
  • conda-forge/linux-64::gensim==4.3.1=py310h9b08913_1
  • defaults/linux-64::conda-repo-cli==1.0.41=py310h06a4308_0
  • defaults/linux-64::distributed==2023.4.1=py310h06a4308_0
  • conda-forge/noarch::notebook==6.5.4=pyha770c72_0
  • conda-forge/linux-64::scikit-learn-intelex==2023.1.1=py310hff52083_0
  • conda-forge/noarch::tldextract==3.4.4=pyhd8ed1ab_0
  • conda-forge/linux-64::nss==3.89=he45b914_0
  • conda-forge/noarch::jupyter-lsp==2.2.0=pyhd8ed1ab_0
  • conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0
  • conda-forge/linux-64::spyder==5.4.3=py310hff52083_0
  • conda-forge/noarch::patsy==0.5.3=pyhd8ed1ab_0
  • conda-forge/noarch::send2trash==1.8.2=pyh41d4057_0
  • conda-forge/noarch::jupyter_server_terminals==0.4.4=pyhd8ed1ab_1
  • conda-forge/noarch::colorcet==3.0.1=pyhd8ed1ab_0
  • defaults/linux-64::pyqtwebengine==5.15.7=py310h6a678d5_1
  • conda-forge/noarch::jupyterlab_server==2.22.1=pyhd8ed1ab_0
  • defaults/noarch::conda-verify==3.4.2=py_1
  • conda-forge/noarch::python-lsp-black==1.3.0=pyhd8ed1ab_0
  • conda-forge/noarch::jupyterlab==4.0.1=pyhd8ed1ab_0
  • conda-forge/noarch::ipywidgets==8.0.6=pyhd8ed1ab_0
  • conda-forge/noarch::datashader==0.15.0=pyhd8ed1ab_0
  • conda-forge/noarch::seaborn==0.12.2=hd8ed1ab_0
  • conda-forge/noarch::requests-file==1.5.1=pyh9f0ad1d_0
  • defaults/linux-64::_anaconda_depends==2023.03=py310_0
  • conda-forge/noarch::pooch==1.7.0=pyha770c72_3
  • conda-forge/noarch::terminado==0.17.1=pyh41d4057_0
  • conda-forge/linux-64::jupyter==1.0.0=py310hff52083_8
  • conda-forge/noarch::click==8.1.3=unix_pyhd8ed1ab_2
  • defaults/linux-64::pyqt==5.15.7=py310h6a678d5_1
  • conda-forge/linux-64::statsmodels==0.14.0=py310h278f3c1_1
  • conda-forge/linux-64::scikit-learn==1.2.2=py310hf7d194e_2
  • conda-forge/linux-64::scrapy==2.9.0=py310hff52083_0
  • conda-forge/noarch::nltk==3.8.1=pyhd8ed1ab_0
  • defaults/linux-64::qtwebkit==5.212=h4eab89a_4
  • defaults/linux-64::anaconda-client==1.11.2=py310h06a4308_0
  • conda-forge/noarch::pyct==0.4.6=py_0
  • conda-forge/noarch::spyder-kernels==2.4.3=unix_pyhd8ed1ab_0
  • conda-forge/noarch::notebook-shim==0.2.3=pyhd8ed1ab_0
  • conda-forge/noarch::seaborn-base==0.12.2=pyhd8ed1ab_0
  • conda-forge/noarch::jupyter_console==6.6.3=pyhd8ed1ab_0
  • conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6
  • conda-forge/noarch::qtconsole==5.4.3=pyhd8ed1ab_0
  • conda-forge/noarch::qtconsole-base==5.4.3=pyha770c72_0
  • conda-forge/noarch::numpydoc==1.5.0=pyhd8ed1ab_0
  • defaults/linux-64::navigator-updater==0.4.0=py310h06a4308_0
  • conda-forge/linux-64::black==23.3.0=py310hff52083_1
  • conda-forge/linux-64::conda==23.5.0=py310hff52083_1
  • conda-forge/noarch::holoviews==1.16.1=pyhd8ed1ab_0
  • conda-forge/noarch::sphinx==7.0.1=pyhd8ed1ab_0
  • conda-forge/noarch::jupyter_server==2.6.0=pyhd8ed1ab_0
  • defaults/linux-64::dask==2023.4.1=py310h06a4308_0
  • defaults/linux-64::anaconda-project==0.11.1=py310h06a4308_0
    failed with initial frozen solve. Retrying with flexible solve.
    Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
    Collecting package metadata (repodata.json): |
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant