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Build datasets retrieving DNA coordinates for all genes #41

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St3451 opened this issue Oct 30, 2024 · 0 comments

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St3451 commented Oct 30, 2024

Change the way the DNA coordinates is obtained going from Uniprot (EMBL-EBI) API to Ensembl API (as it is now done for the Normal Bladder Analaysis).

https://github.com/bbglab/clustering_3d/blob/ff9875ad0a6bd0017ff2c5edf37942dbf187b153/scripts/datasets/seq_for_mut_prob.py#L181-L328

So, to be able to get the coordinates from all transcripts (there will not be the problem of missing MANE entries).

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