From d93d7a1f801a8577bf3def607e40e57e0743b607 Mon Sep 17 00:00:00 2001
From: "I. Reyes-Salazar" <iker.reyes@irbbarcelona.org>
Date: Mon, 15 Oct 2018 09:34:55 +0200
Subject: [PATCH] Added error check in triplets extra file

---
 extra/triplets.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/extra/triplets.py b/extra/triplets.py
index 220392a..6675851 100644
--- a/extra/triplets.py
+++ b/extra/triplets.py
@@ -82,7 +82,7 @@ def element_counter_executor(elements):
         stop = segment[STOP]
         try:
             seq = refseq(build, chrom, start, stop-start+1)
-        except ValueError:
+        except (ValueError, RuntimeError):
             logging.warning('Error in ref for CHR: {} positions: {}:{}'.format(chrom, start, stop))
             continue
         counts.update(triplets(seq))