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This goes towards being able to manipulate DAA files in a more general sense, which I plan to implement through an option to convert text-based alignment files to DAA. It may still take some time however until this is ready. |
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I think it would be helpful to have a flag to randomly subsample n records of an existing, un-Meganized .daa file using Diamond and return a new .daa file. The primary use case for this would be to optimize the LCA parameters in daa-meganize on a small dataset. Currently, I randomly sub-sample the fastq files then rerun the Diamond search but this is time-consuming for large databases.
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