NAMESPACE

# Generated by roxygen2: do not edit by hand

export("trim.start.pos<-")
export(S4_to_dataframe)
export(df_to_isoLIB)
export(df_to_isoTAX)
export(export_html)
export(get_db)
export(get_os)
export(get_sanger_date)
export(get_vsearch)
export(isoALL)
export(isoLIB)
export(isoQC)
export(isoTAX)
export(make_fasta)
export(make_tree)
export(sanger_assembly)
export(search_db)
export(trim.start.pos)
export(valid_tax_check)
exportClasses(isoLIB)
exportClasses(isoQC)
exportClasses(isoTAX)
exportMethods("trim.start.pos<-")
exportMethods(export_html)
exportMethods(isoLIB)
exportMethods(isoQC)
exportMethods(isoTAX)
exportMethods(show)
exportMethods(trim.start.pos)
import(crosstalk)
import(dplyr)
import(htmltools)
import(methods)
import(reactable)
import(reactablefmtr)
importFrom(BiocManager,install)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,writeXStringSet)
importFrom(DECIPHER,AlignSeqs)
importFrom(DECIPHER,ConsensusSequence)
importFrom(LPSN,open_lpsn)
importFrom(LPSN,retrieve)
importFrom(R.utils,gunzip)
importFrom(ape,as.DNAbin)
importFrom(ape,dist.dna)
importFrom(ape,njs)
importFrom(crosstalk,SharedData)
importFrom(crosstalk,bscols)
importFrom(crosstalk,filter_checkbox)
importFrom(crosstalk,filter_select)
importFrom(crosstalk,filter_slider)
importFrom(dataui,dui_sparkbandline)
importFrom(dataui,dui_sparkline)
importFrom(dataui,dui_sparklineseries)
importFrom(dplyr,full_join)
importFrom(getPass,getPass)
importFrom(ggtree,geom_tiplab)
importFrom(ggtree,geom_tippoint)
importFrom(ggtree,ggtree)
importFrom(ggtree,scale_colour_manual)
importFrom(htmltools,browsable)
importFrom(htmltools,div)
importFrom(htmltools,save_html)
importFrom(msa,msaMuscle)
importFrom(pander,openFileInOS)
importFrom(rentrez,entrez_fetch)
importFrom(sangeranalyseR,SangerRead)
importFrom(sangerseqR,read.abif)
importFrom(scales,comma)
importFrom(scales,comma_format)
importFrom(scales,hue_pal)
importFrom(scales,label_number)
importFrom(seqinr,read.fasta)
importFrom(seqinr,write.fasta)
importFrom(shiny,tagList)
importFrom(stats,setNames)
importFrom(stringr,str_count)
importFrom(stringr,str_pad)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split_fixed)
importFrom(stringr,str_squish)
importFrom(stringr,str_sub)
importFrom(stringr,str_subset)
importFrom(svMisc,progress)
importFrom(tidytree,as.treedata)
importFrom(utils,download.file)
importFrom(utils,read.csv)
importFrom(utils,select.list)
importFrom(utils,untar)
importFrom(utils,unzip)
importFrom(xmlconvert,xml_to_df)