Testing

[ben-silke]

pipeline 1:
prodigal -> just orthologs

[ben-silke]

the testing script required to get the performance and accuracy

the script needs to parse all files and then check for gene locations.
Then assert the correctness of the operation against the already annotates sequences.

it also needs to record time taken for the operation and the computational complexity of the operation

[ben-silke]

Testing;

compare just orthologs and orthomcl and seqanalysis tool

[ben-silke]

it doesnt make so much sense to test orthomcl because it is so old (2003); just test JustOrthologs and the seqanalysis tool because they have been released >2019