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Experiment plan #41

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ben-silke opened this issue Sep 22, 2022 · 2 comments
Open

Experiment plan #41

ben-silke opened this issue Sep 22, 2022 · 2 comments

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@ben-silke
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ben-silke commented Sep 22, 2022 •
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Assessment of gene identification:

Data: Soil Reference genomes
programs to test:
prodigal [installed]
genemark2S [not installed]

asssment of ortholog identification

data_one quest4ortholog data

Programs to test:
justOrthologs [installed and python3]
blast best reciprocal hits
@ben-silke
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genemark2s installed and run on base NC_000913.fasta

@ben-silke
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funnily; genemark2s and prodigal seem to have more trouble running on other genes...

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