From 73f41cb0b07a9a8cf1befcb6e905dcf71420f9b3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= Date: Tue, 12 Nov 2024 11:44:11 +0100 Subject: [PATCH] remove history section, will add a changelog next --- README.md | 87 +------------------------------------------------------ 1 file changed, 1 insertion(+), 86 deletions(-) diff --git a/README.md b/README.md index b1e2ee70..677a9e9e 100644 --- a/README.md +++ b/README.md @@ -57,7 +57,7 @@ It is deployed completely differently and gained many new features with many new - [Users & Passwords](#Users-Passwords) - [Development](#Development) - [Requirements](#Requirements) -- [History](#History) +- [Changelog](#Changelog) - [Support & Bug Reports](#Support-Bug-Reports) @@ -950,91 +950,6 @@ dive - [Docker](https://www.docker.io/gettingstarted/#h_installation) -# History [[toc]](#toc) - -- 0.1: Initial release! - - with Apache2, PostgreSQL and Tool Shed integration -- 0.2: complete new Galaxy stack. - - with nginx, uwsgi, proftpd, docker, supervisord and SLURM -- 0.3: Add Interactive Environments - - IPython in docker in Galaxy in docker - - advanged logging -- 0.4: - - base the image on toolshed/requirements with all required Galaxy dependencies - - use Ansible roles to build large parts of the image - - export the supervisord web interface on port 9002 - - enable Galaxy reports webapp -- 15.07: - - `install-biojs` can install BioJS visualisations into Galaxy - - `add-tool-shed` can be used to activate third party Tool Sheds in child Dockerfiles - - many documentation improvements - - RStudio is now part of Galaxy and this Image - - configurable postgres UID/GID by @chambm - - smarter starting of postgres during Tool installations by @shiltemann -- 15.10: - - new Galaxy 15.10 release - - fix https://github.com/bgruening/docker-galaxy-stable/issues/94 -- 16.01: - - enable Travis testing for all builds and PR - - offer new [yaml based tool installations](https://github.com/galaxyproject/ansible-galaxy-tools/blob/master/files/tool_list.yaml.sample) - - enable dynamic UWSGI processes and threads with `-e UWSGI_PROCESSES=2` and `-e UWSGI_THREADS=4` - - enable dynamic Galaxy handlers `-e GALAXY_HANDLER_NUMPROCS=2` - - Addition of a new `lite` mode contributed by @kellrott - - first release with Jupyter integration -- 16.04: - - include a Galaxy-bare mode, enable with `-e BARE=True` - - first release with [HTCondor](https://research.cs.wisc.edu/htcondor/) installed and pre-configured -- 16.07: - - documentation and tests updates for SLURM integration by @mvdbeek - - first version with initial Docker compose support (proftpd ✔️) - - SFTP support by @zfrenchee -- 16.10: - - [HTTPS support](https://github.com/bgruening/docker-galaxy-stable/pull/240 ) by @zfrenchee and @mvdbeek -- 17.01: - - enable Conda dependency resolution by default - - [new Galaxy version](https://docs.galaxyproject.org/en/master/releases/17.01_announce.html) - - more compose work (slurm, postgresql) -- 17.05: - - add PROXY_PREFIX variable to enable automatic configuration of Galaxy running under some prefix (@abretaud) - - enable quota by default (just the funtionality, not any specific value) - - HT-Condor is now supported in compose with semi-autoscaling and BioContainers - - Galaxy Docker Compose is completely under Travis testing and available with SLURM and HT-Condor - - using Docker `build-arg`s for GALAXY_RELEASE and GALAXY_REPO -- 17.09: - - much improved documentation about using Galaxy Docker and an external cluster (@rhpvorderman) - - CVMFS support - mounting in 4TB of pre-build reference data (@chambm) - - Singularity support and tests (compose only) - - more work on K8s support and testing (@jmchilton) - - using .env files to configure the compose setup for SLURM, Condor, K8s, SLURM-Singularity, Condor-Docker -- 18.01: - - tracking the Galaxy release_18.01 branch - - uwsgi work to adopt to changes for 18.01 - - remove nodejs-legacy & npm from Dockerfile and install latest version from ansible-extras - - initial galaxy.ini → galaxy.yml integration - - grafana and influxdb container (compose) - - Galaxy telegraf integration to push to influxdb (compose) - - added some documentation (compose) -- 18.05: - - Nothing very special, but a awesome Galaxy release as usual -- 18.09: - - new and more powerful orchestration build script (build-orchestration-images.sh) by @pcm32 - - a lot of bug-fixes to the compose setup by @abretaud -- 19.01: - - This is featuring the latest and greatest from the Galaxy community - - Please note that this release will be the last release which is based on `ubuntu:14.04` and PostgreSQL 9.3. - We will migrate to `ubuntu:18.04` and a newer PostgreSQL version in `19.05`. Furthermore, we will not - support old Galaxy tool dependencies. -- 19.05: - - The image is now based on `ubuntu:18.04` (instead of ubuntu:14.04 previously) and PostgreSQL 11.5 (9.3 previously). - See [migration documention](#Postgresql-migration) to migrate the postgresql database from 9.3 to 11.5. - - We not longer support old Galaxy tool dependencies. -- 20.05: - - Featuring Galaxy 20.05 - - Completely reworked compose setup - - The default admin password and apikey (`GALAXY_DEFAULT_ADMIN_PASSWORD` and `GALAXY_DEFAULT_ADMIN_KEY`) have changed: the password is now `password` (instead of `admin`) and the apikey `fakekey` (instead of `admin`). -- 20.09: - - Featuring Galaxy 20.09 - # Support & Bug Reports [[toc]](#toc) You can file an [github issue](https://github.com/bgruening/docker-galaxy-stable/issues) or ask